YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17740955, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	294 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17740955, gi|....

Description	E-value	Query Range	Subject Range
gi\|119375107, gi... - gi\|69936296\|ref\|ZP_00631122.1\| Formyltetrahydrofolate deformylase [Paracoccus denitrificans PD1222],...	329.0	[0..1]	[294..1]
gi\|83360838, gi\|... - gi\|83369484\|ref\|ZP_00914338.1\| Formyltetrahydrofolate deformylase [Rhodobacter sphaeroides ATCC 1702...	329.0	[0..1]	[294..1]
gi\|25286220, gi\|... - pir\|\|AC3076 formyltetrahydrofolate deformylase [imported] - Agrobacterium tumefaciens (strain C58, D... gi\|15159028, gi\|... - gi\|17937920\|ref\|NP_534709.1\| formyltetrahydrofolate deformylase [Agrobacterium tumefaciens str. C58]...	325.0	[0..1]	[294..7]
gi\|114767063, gi... - gi\|114767063\|ref\|ZP_01445960.1\| formyltetrahydrofolate deformylase protein [Roseovarius sp. HTCC2601...	324.0	[0..1]	[294..1]
gi\|126463363, gi... - gi\|83372593\|ref\|ZP_00917373.1\| Formyltetrahydrofolate deformylase [Rhodobacter sphaeroides ATCC 1702...	324.0	[0..1]	[294..1]
gi\|77464523, gi\|... - gi\|77464523\|ref\|YP_354027.1\| formyltetrahydrofolate deformylase [Rhodobacter sphaeroides 2.4.1], gi\|... gi\|221161214, gi... - gi\|221640433\|ref\|YP_002526695.1\| Formyltetrahydrofolate deformylase [Rhodobacter sphaeroides KD131],...	323.0	[0..1]	[294..1]
gi\|15075961 - gi\|15075961\|emb\|CAC47515.1\| Putative formyltetrahydrofolate deformylase [Sinorhizobium meliloti 1021... gi\|15966689 - gi\|15966689\|ref\|NP_387042.1\| formyltetrahydrofolate deformylase [Sinorhizobium meliloti 1021]	321.0	[0..1]	[294..1]
gi\|113872227, gi... - gi\|150398028\|ref\|YP_001328495.1\| formyltetrahydrofolate deformylase [Sinorhizobium medicae WSM419], ...	321.0	[0..1]	[294..1]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSYVLTVAC KSTRGIVAAI SGYLAEKGCN IVDSSQFDDL ETGKFFMRVS FISEEGASLQ  60
   61 AITEGFQPVS EKFGMASDIY PDGQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.0
Match:	1u8sA
Description:	Crystal structure of putative glycine cleavage system transcriptional repressor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring aldehyde or ketonic groups	1.82494854621265	bayes_pls_golite062009
catalytic activity	1.01569611874813	bayes_pls_golite062009
transferase activity	0.07375530569672	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [85-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RMKAMLMVSR FGHCLNDLLY RWKIGALPID IVGVVSNHFD YQKVVVNHDI PFHHIKVTKE  60
   61 NKPKAEAQLM DLIETSGTEL VVLARYMQVL SDEMCRKMSG KIINIHHSFL PSFKGANPYK 120
  121 QAYERGVKLI GATAHYVTGD LDEGPIIEQD TVRVTHAQSA EDYVSLGRDV ESQVLARAIH 180
  181 AHIHHRTFIN GNRTVVFPPS PGSYASERMG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.69897
Match:	1zlxA
Description:	The apo structure of human glycinamide ribonucleotide transformylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydroxymethyl-, formyl- and related transferase activity	4.30911230869939	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	3.93829204810029	bayes_pls_golite062009
phosphoribosylglycinamide formyltransferase activity	3.16061609458624	bayes_pls_golite062009
catalytic activity	2.53047786804923	bayes_pls_golite062009
methyltransferase activity	1.49959796419617	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.49630496597474	bayes_pls_golite062009
transferase activity	1.21569993951472	bayes_pls_golite062009
formyltetrahydrofolate deformylase activity	0.85803295611657	bayes_pls_golite062009
methionyl-tRNA formyltransferase activity	0.27296524587077	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: