YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25520739
Organism:	Agrobacterium tumefaciens
Length:	212 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25520739.

Description	E-value	Query Range	Subject Range
gi\|25522928 - pir\|\|AE2905 2'-5' RNA ligase ligT [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gi\|17936553, gi\|... - gi\|17936553\|ref\|NP_533343.1\| 2'-5' RNA ligase [Agrobacterium tumefaciens str. C58], gi\|17741183\|gb\|A...	215.0	[0..16]	[212..1]
gi\|15076244 - gi\|15076244\|emb\|CAC47797.1\| Putative 2'-5' RNA ligase [Sinorhizobium meliloti 1021] gi\|15966971 - gi\|15966971\|ref\|NP_387324.1\| putative 2'-5' RNA ligase protein [Sinorhizobium meliloti 1021]	204.0	[0..16]	[211..1]
gi\|13473672, gi\|... - gi\|14024422\|dbj\|BAB51026.1\| ABC transporter (permease) [Mesorhizobium loti MAFF303099], gi\|13473672\|...	202.0	[0..16]	[212..1]
gi\|115258903, gi... - gi\|116254255\|ref\|YP_770093.1\| putative 2'-5' RNA ligase [Rhizobium leguminosarum bv. viciae 3841], g...	202.0	[0..15]	[212..1]
gi\|150398266, gi... - gi\|150398266\|ref\|YP_001328733.1\| 2'-5' RNA ligase [Sinorhizobium medicae WSM419], gi\|150029781\|gb\|AB...	201.0	[0..16]	[210..1]
gi\|86283618, gi\|... - gi\|86359516\|ref\|YP_471408.1\| 2`-5` RNA ligase protein [Rhizobium etli CFN 42], gi\|86283618\|gb\|ABC926...	198.0	[0..16]	[212..1]
gi\|17983903, gi\|... - gi\|17988145\|ref\|NP_540779.1\| 2'-5' RNA ligase [Brucella melitensis 16M], gi\|17983903\|gb\|AAL53043.1\| ... gi\|25526996 - pir\|\|AH3484 2'-5' RNA ligase (EC 6.5.1.-) [imported] - Brucella melitensis (strain 16M) gi\|225851622, gi... - gi\|225851622\|ref\|YP_002731855.1\| 2'-5' RNA ligase [Brucella melitensis ATCC 23457], gi\|225639987\|gb\|...	192.0	[0..16]	[211..1]
gi\|82699004 - gi\|82699004\|ref\|YP_413578.1\| 2`-5` RNA ligase, putative [Brucella melitensis biovar Abortus 2308] gi\|62195199, gi\|... - gi\|62289067\|ref\|YP_220860.1\| hypothetical protein BruAb1_0082 [Brucella abortus bv. 1 str. 9-941], g... gi\|82615105 - gi\|82615105\|emb\|CAJ10036.1\| 2`-5` RNA ligase, putative [Brucella melitensis biovar Abortus 2308] gi\|237814556, gi... - gi\|237814556\|ref\|ZP_04593554.1\| 2'-5' RNA ligase [Brucella abortus str. 2308 A], gi\|237789393\|gb\|EEP... gi\|254690395 - gi\|254690395\|ref\|ZP_05153649.1\| 2`-5` RNA ligase, putative [Brucella abortus bv. 6 str. 870] gi\|254700896 - gi\|254700896\|ref\|ZP_05162724.1\| 2`-5` RNA ligase, putative [Brucella suis bv. 5 str. 513] gi\|254705260 - gi\|254705260\|ref\|ZP_05167088.1\| 2`-5` RNA ligase, putative [Brucella suis bv. 3 str. 686] gi\|254694883 - gi\|254694883\|ref\|ZP_05156711.1\| 2`-5` RNA ligase, putative [Brucella abortus bv. 3 str. Tulya] gi\|254696512 - gi\|254696512\|ref\|ZP_05158340.1\| 2`-5` RNA ligase, putative [Brucella abortus bv. 2 str. 86/8/59] gi\|254713339 - gi\|254713339\|ref\|ZP_05175150.1\| 2`-5` RNA ligase, putative [Brucella ceti M644/93/1] gi\|161334882, gi... - gi\|161618071\|ref\|YP_001591958.1\| 2'-5' RNA ligase [Brucella canis ATCC 23365], gi\|161334882\|gb\|ABX61... gi\|254716307 - gi\|254716307\|ref\|ZP_05178118.1\| 2`-5` RNA ligase, putative [Brucella ceti M13/05/1] gi\|163842358, gi... - gi\|163842358\|ref\|YP_001626762.1\| 2'-5' RNA ligase [Brucella suis ATCC 23445], gi\|163673081\|gb\|ABY371... gi\|254707216 - gi\|254707216\|ref\|ZP_05169044.1\| 2`-5` RNA ligase, putative [Brucella pinnipedialis M163/99/10] gi\|189018913, gi... - gi\|189023341\|ref\|YP_001934109.1\| 2`-5` RNA ligase, putative [Brucella abortus S19], gi\|189018913\|gb\|... gi\|254709238 - gi\|254709238\|ref\|ZP_05171049.1\| 2`-5` RNA ligase, putative [Brucella pinnipedialis B2/94] gi\|254731425 - gi\|254731425\|ref\|ZP_05190003.1\| 2`-5` RNA ligase, putative [Brucella abortus bv. 4 str. 292] gi\|23500998, gi\|... - gi\|23500998\|ref\|NP_697125.1\| hypothetical protein BR0084 [Brucella suis 1330], gi\|23346858\|gb\|AAN290...	192.0	[0..16]	[211..1]
gi\|91799062, gi\|... - gi\|92116168\|ref\|YP_575897.1\| 2',5' RNA ligase [Nitrobacter hamburgensis X14], gi\|91799062\|gb\|ABE6143...	192.0	[0..16]	[193..1]
Y099_PYRHO - UPF0097 protein PH0099 OS=Pyrococcus horikoshii GN=PH0099 PE=1 SV=1 THPR_PYRHO - RNA 2',3'-cyclic phosphodiesterase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 99...	191.0	[0..17]	[193..1]

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Predicted Domain #1

Region A:
Residues: [1-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRYACSAKR FGELAMPRLF TALEIPRNAA MSLSLLRGGL PGARWIDVEN YHITLRFIGD  60
   61 IDGRTADEVV DRLDRIERPE FQLNLTGIGS FGSKKPHSIW AGVSPSPEMH ALQAEVERIC 120
  121 QRIGLPPDPR KFMPHVTLAR LRSSRVDDVV HYLSGRGNFR TSPFTVGRFV LMSSKESVGG 180
  181 GPYVVEEAFP LHEARSSSIF SSNDLHPAKS ML

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.0
Match:	1vdxA
Description:	Crystal Structure of a Pyrococcus horikoshii protein with similarities to 2'5' RNA-ligase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits