YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11362473
Organism:	Xylella fastidiosa
Length:	203 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11362473.

Description	E-value	Query Range	Subject Range
gi\|28198894, gi\|... - gi\|28198894\|ref\|NP_779208.1\| phage-related lysozyme [Xylella fastidiosa Temecula1], gi\|28056985\|gb\|A...	290.0	[0..1]	[203..1]
gi\|9107481, gi\|1... - gi\|9107481\|gb\|AAF85113.1\|AE004042_12 phage-related lysozyme [Xylella fastidiosa 9a5c], gi\|15838905\|r... gi\|11362474 - pir\|\|C82574 phage-related lysozyme XF2314 [imported] - Xylella fastidiosa (strain 9a5c)	249.0	[0..26]	[202..4]
gi\|71902154, gi\|... - gi\|71902154\|ref\|ZP_00684178.1\| Lysozyme [Xylella fastidiosa Ann-1], gi\|71728088\|gb\|EAO30291.1\| Lysoz...	230.0	[0..39]	[202..1]
gi\|71899750, gi\|... - gi\|71899750\|ref\|ZP_00681901.1\| Glycoside hydrolase, family 24 [Xylella fastidiosa Ann-1], gi\|7173044... gi\|71276723, gi\|... - gi\|71276723\|ref\|ZP_00652991.1\| Glycoside hydrolase, family 24 [Xylella fastidiosa Dixon], gi\|7116248...	225.0	[0..39]	[202..1]

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Predicted Domain #1

Region A:
Residues: [1-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCPHRMIYS RPAHLSRAFF YSKPATAFGR FFAFWSPPMQ TIGEEGIALI KFFEGCKLNP  60
   61 YTCPGGVLTI GYGETGKHVV PDMCLANEQE ADAMLRARLA KEFEPAVRRY VRVPLKQQQF 120
  121 DALVSLSFNI GTGAFHRSTL LKRLNAGDVA GAAEQFGAWK FSSGRVLPGL VRRRKAERWL 180
  181 FEGQDWQAAL AAEHAAVKKA SRD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.39794
Match:	2anvA
Description:	crystal structure of P22 lysozyme mutant L86M
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits