YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9107368, gi\|1...
Organism:	Xylella fastidiosa 9a5c
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9107368, gi|1....

Description	E-value	Query Range	Subject Range
gi\|21242571, gi\|... - gi\|21242571\|ref\|NP_642153.1\| hypothetical protein XAC1827 [Xanthomonas axonopodis pv. citri str. 306...	167.0	[0..1]	[107..1]
gi\|58426471 - gi\|58426471\|gb\|AAW75508.1\| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331]	166.0	[0..1]	[107..72]
gi\|66574025, gi\|... - gi\|66768693\|ref\|YP_243455.1\| hypothetical protein XC_2382 [Xanthomonas campestris pv. campestris str... gi\|21231255, gi\|... - gi\|21231255\|ref\|NP_637172.1\| hypothetical protein XCC1807 [Xanthomonas campestris pv. campestris str...	165.0	[0..1]	[107..1]
gi\|28057253, gi\|... - gi\|28199155\|ref\|NP_779469.1\| hypothetical protein PD1269 [Xylella fastidiosa Temecula1], gi\|28057253... gi\|182631996, gi... - gi\|182681886\|ref\|YP_001830046.1\| TrpR like protein, YerC/YecD [Xylella fastidiosa M23], gi\|182631996...	164.0	[0..1]	[112..1]
gi\|78035859, gi\|... - gi\|78047429\|ref\|YP_363604.1\| hypothetical protein XCV1873 [Xanthomonas campestris pv. vesicatoria st...	164.0	[0..1]	[107..1]
YERC_BACSU - Uncharacterized protein yerC OS=Bacillus subtilis GN=yerC PE=4 SV=1 YERC_BACSU - Uncharacterized protein YerC OS=Bacillus subtilis (strain 168) GN=yerC PE=4 SV=1 gi\|221322020 - gi\|221322020\|ref\|ZP_03603314.1\| hypothetical protein BsubsS_03714 [Bacillus subtilis subsp. subtilis... gi\|221317741 - gi\|221317741\|ref\|ZP_03599035.1\| hypothetical protein BsubsJ_03628 [Bacillus subtilis subsp. subtilis... gi\|221312817 - gi\|221312817\|ref\|ZP_03594622.1\| hypothetical protein BsubsN3_03674 [Bacillus subtilis subsp. subtili...	164.0	[0..16]	[110..10]
gi\|71898431, gi\|... - gi\|71898431\|ref\|ZP_00680603.1\| Trp repressor [Xylella fastidiosa Ann-1], gi\|71731744\|gb\|EAO33803.1\| ...	163.0	[0..1]	[112..1]
gi\|22994434, gi\|... - gi\|71274442\|ref\|ZP_00650730.1\| Trp repressor [Xylella fastidiosa Dixon], gi\|71164174\|gb\|EAO13888.1\| ... gi\|170730541, gi... - gi\|170730541\|ref\|YP_001775974.1\| hypothetical protein Xfasm12_1421 [Xylella fastidiosa M12], gi\|1679... gi\|71729803, gi\|... - gi\|71900438\|ref\|ZP_00682570.1\| Trp repressor [Xylella fastidiosa Ann-1], gi\|71729803\|gb\|EAO31902.1\| ...	162.0	[0..1]	[112..1]
gi\|226224366, gi... - gi\|226224366\|ref\|YP_002758473.1\| hypothetical protein Lm4b_01777 [Listeria monocytogenes Clip81459],... gi\|254825992 - gi\|254825992\|ref\|ZP_05230993.1\| hypothetical protein LmonFS_12529 [Listeria monocytogenes FSL J1-194... gi\|254853673 - gi\|254853673\|ref\|ZP_05243021.1\| hypothetical protein LmonoFSL_10392 [Listeria monocytogenes FSL R2-5... gi\|254880135 - gi\|254880135\|ref\|ZP_05252845.1\| hypothetical protein LmonFSL_13121 [Listeria monocytogenes FSL J2-07... gi\|255025927 - gi\|255025927\|ref\|ZP_05297913.1\| hypothetical protein LmonocytFSL_05520 [Listeria monocytogenes FSL J... gi\|255030232 - gi\|255030232\|ref\|ZP_05302183.1\| hypothetical protein LmonL_16166 [Listeria monocytogenes LO28] gi\|224499518 - gi\|224499518\|ref\|ZP_03667867.1\| putative TrpR-like protein YerC/YecD [Listeria monocytogenes Finland... gi\|255521955 - gi\|255521955\|ref\|ZP_05389192.1\| hypothetical protein LmonocFSL_12157 [Listeria monocytogenes FSL J1-... gi\|217964089, gi... - gi\|217964089\|ref\|YP_002349767.1\| putative TrpR-like protein YerC/YecD [Listeria monocytogenes HCC23]... gi\|116873197, gi... - gi\|116873197\|ref\|YP_849978.1\| hypothetical protein lwe1781 [Listeria welshimeri serovar 6b str. SLCC... gi\|153185514, gi... - gi\|254900732\|ref\|ZP_05260656.1\| hypothetical protein LmonJ_12989 [Listeria monocytogenes J0161], gi\|... gi\|254832508, gi... - gi\|254832508\|ref\|ZP_05237163.1\| hypothetical protein Lmon1_14231 [Listeria monocytogenes 10403S], gi... gi\|127765391, gi... - gi\|254913783\|ref\|ZP_05263795.1\| hypothetical protein LmonJ2_13339 [Listeria monocytogenes J2818], gi... gi\|133726901, gi... - gi\|254872932\|ref\|ZP_05245642.1\| hypothetical protein LmonocytogFSL_08827 [Listeria monocytogenes FSL... gi\|133729811, gi... - gi\|254829484\|ref\|ZP_05234171.1\| hypothetical protein LmonocytogeFSL_13558 [Listeria monocytogenes FS... gi\|254938170, gi... - gi\|254938170\|ref\|ZP_05269867.1\| hypothetical protein LmonF6_13619 [Listeria monocytogenes F6900], gi... gi\|153202722, gi... - gi\|254932791\|ref\|ZP_05266150.1\| hypothetical protein LmonH_10178 [Listeria monocytogenes HPB2262], g... gi\|224503311 - gi\|224503311\|ref\|ZP_03671618.1\| putative TrpR-like protein YerC/YecD [Listeria monocytogenes FSL R2-... gi\|46907993, gi\|... - gi\|46907993\|ref\|YP_014382.1\| hypothetical protein LMOf2365_1788 [Listeria monocytogenes str. 4b F236... gi\|16803803 - gi\|16803803\|ref\|NP_465288.1\| hypothetical protein lmo1763 [Listeria monocytogenes EGD-e] gi\|16414376, gi\|... - pir\|\|AI1666 hypothetical protein homolog lin1875 [imported] - Listeria innocua (strain Clip11262), ... gi\|16800941 - gi\|16800941\|ref\|NP_471209.1\| hypothetical protein lin1875 [Listeria innocua Clip11262] gi\|47015975, gi\|... - gi\|47095690\|ref\|ZP_00233297.1\| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F685... gi\|47093689, gi\|... - gi\|47093689\|ref\|ZP_00231442.1\| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858]... gi\|25341358, gi\|... - pir\|\|AC1295 hypothetical protein lmo1763 [imported] - Listeria monocytogenes (strain EGD-e), gi\|1641...	158.0	[0..17]	[104..11]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQRPIPRPQ TDTTAALQAL ADAFACLRNS ATVLAFLRDL CTPAELEALA DRWRVVPLLL  60
   61 QGRPYRDIHD HTGISVTTIG RVARCLEHGT GGYAAVLQVQ TMPPASSIEK PQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.47
Match:	3wrpA
Description:	FLEXIBILITY OF THE DNA-BINDING DOMAINS OF TRP REPRESSOR
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits