YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11362474
Organism:	Xylella fastidiosa
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11362474.

Description	E-value	Query Range	Subject Range
gi\|28198894, gi\|... - gi\|28198894\|ref\|NP_779208.1\| phage-related lysozyme [Xylella fastidiosa Temecula1], gi\|28056985\|gb\|A...	245.0	[0..4]	[180..26]
gi\|11362473 - pir\|\|H82653 phage-related lysozyme XF1669 XF1564 [imported] - Xylella fastidiosa (strain 9a5c) gi\|15838165, gi\|... - gi\|9106729\|gb\|AAF84478.1\|AE003992_14 phage-related lysozyme [Xylella fastidiosa 9a5c], gi\|9106609\|gb...	241.0	[0..4]	[180..26]
gi\|71902154, gi\|... - gi\|71902154\|ref\|ZP_00684178.1\| Lysozyme [Xylella fastidiosa Ann-1], gi\|71728088\|gb\|EAO30291.1\| Lysoz...	231.0	[0..17]	[181..1]
gi\|71899750, gi\|... - gi\|71899750\|ref\|ZP_00681901.1\| Glycoside hydrolase, family 24 [Xylella fastidiosa Ann-1], gi\|7173044... gi\|71276723, gi\|... - gi\|71276723\|ref\|ZP_00652991.1\| Glycoside hydrolase, family 24 [Xylella fastidiosa Dixon], gi\|7116248...	227.0	[0..17]	[182..1]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQTAFGRFF AFWSPPMQTI GEEGIALIKF FEGCKLNPYT CPGGVLTIGY GETGKHVRPD  60
   61 MRLANEQEAD ARLRARLAKE FEPAVRRYVR VPLKQQQFDA LVSLSFNIGT GAFHRSTLLR 120
  121 KLNAGDVAGA AEQFHVWKWA GGSIQSGLII RRAAERALFE GGDWRAEAEK QRAALKSKGR 180
  181 RG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.39794
Match:	2anvA
Description:	crystal structure of P22 lysozyme mutant L86M
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits