YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|10956730, gi\|...
Organism:	Xylella fastidiosa 9a5c
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|10956730, gi|....

Description	E-value	Query Range	Subject Range
gi\|209483441 - gi\|209483441\|gb\|ACI47260.1\| InvA [Klebsiella pneumoniae] gi\|156936517, gi... - gi\|156936517\|ref\|YP_001440432.1\| hypothetical protein ESA_pESA2p06563 [Enterobacter sakazakii ATCC B... gi\|34013343, gi\|... - gi\|34500522\|ref\|NP_904293.1\| DNA invertase [Delftia acidovorans], gi\|34013343\|dbj\|BAC82016.1\| DNA in... gi\|46319637, gi\|... - gi\|67543486\|ref\|ZP_00421418.1\| Resolvase, N-terminal:Resolvase helix-turn-helix region [Burkholderia... gi\|51470645, gi\|... - gi\|51492602\|ref\|YP_067899.1\| DNA recombinase [Aeromonas punctata], gi\|51470645\|emb\|CAG15136.1\| DNA r... gi\|217507883, gi... - gi\|217970556\|ref\|YP_002355790.1\| Resolvase domain protein [Thauera sp. MZ1T], gi\|217507883\|gb\|ACK548...	204.0	[0..4]	[187..1]
gi\|48762982, gi\|... - ref\|ZP_00267540.1\| COG1961: Site-specific recombinases, DNA invertase Pin homologs [Rhodospirillum r... gi\|83578056, gi\|... - gi\|83582740\|ref\|YP_425046.1\| resolvase [Rhodospirillum rubrum ATCC 11170], gi\|83578056\|gb\|ABC24606.1...	203.0	[0..4]	[187..1]
gi\|170730670, gi... - gi\|170730670\|ref\|YP_001776103.1\| recombinase [Xylella fastidiosa M12], gi\|167965463\|gb\|ACA12473.1\| r... gi\|71902440, gi\|... - gi\|71902440\|ref\|ZP_00684387.1\| Resolvase, N-terminal:Resolvase helix-turn-helix region [Xylella fast... gi\|71163025, gi\|... - gi\|71276107\|ref\|ZP_00652387.1\| Resolvase, N-terminal:Resolvase helix-turn-helix region [Xylella fast...	202.0	[0..4]	[188..1]
gi\|110829362, gi... - gi\|121608377\|ref\|YP_996184.1\| resolvase domain-containing protein [Verminephrobacter eiseniae EF01-2...	202.0	[0..4]	[187..1]
gi\|66862675, gi\|... - gi\|66968593\|ref\|YP_245470.1\| putative DNA invertase [Pseudomonas aeruginosa], gi\|66862675\|emb\|CAI469...	202.0	[0..4]	[185..1]
gi\|15838622, gi\|... - gi\|9107146\|gb\|AAF84830.1\|AE004021_7 DNA invertase [Xylella fastidiosa 9a5c], gi\|15838622\|ref\|NP_2993... gi\|11277976 - pir\|\|F82607 DNA invertase XF2028 [imported] - Xylella fastidiosa (strain 9a5c)	201.0	[0..4]	[187..1]
gi\|19352370, gi\|... - gi\|19352370\|ref\|NP_598128.1\| invertase-like protein [uncultured bacterium], gi\|19352365\|ref\|NP_59812...	198.0	[0..4]	[187..1]
gi\|24345294, gi\|... - gi\|24376376\|ref\|NP_720484.1\| ISSod9, DNA-invertase [Shewanella oneidensis MR-1], gi\|24376250\|ref\|NP_... SO9016 - ISSod9 DNA-invertase (SOA0019 and SOA0170)	198.0	[0..4]	[187..1]
gi\|71839155, gi\|... - gi\|71839155\|ref\|ZP_00678908.1\| Resolvase, N-terminal:Resolvase helix-turn-helix domain [Pelobacter p...	197.0	[0..4]	[187..1]
gi\|71900350, gi\|... - gi\|71900350\|ref\|ZP_00682484.1\| Resolvase, N-terminal:Resolvase helix-turn-helix region [Xylella fast...	197.0	[0..4]	[187..1]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVMLIGYAR VSTQDQNLEL QCEALAKAGC KKVFEDKVSG TRADRPGLAK TLEMLREGDT  60
   61 LVVWKLDRLG RSVKQLVDLV GELHKQGVQF RSLTDSIDTG TPSGRFFFHV MASLAEMERE 120
  121 LIVERTRAGL EVAKQLGRKG GRKRKMTDSK IESAKKLLAN GVPSKDVAKN LGVSIPTLYR 180
  181 WLPASAHT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	1gdtA
Description:	gamma,delta resolvase (C-terminal domain); gamma,delta resolvase, catalytic domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
site-specific recombinase activity	3.0240363733074	bayes_pls_golite062009
transcription regulator activity	1.76956337706487	bayes_pls_golite062009
DNA binding	1.58100039759954	bayes_pls_golite062009
nucleic acid binding	1.46839493313894	bayes_pls_golite062009
catalytic activity	1.20658247466773	bayes_pls_golite062009
transcription factor activity	1.0707787742149	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: