YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30265331, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	180 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30265331, gi|....

Description	E-value	Query Range	Subject Range
ATPD_LACJO - ATP synthase subunit delta OS=Lactobacillus johnsonii GN=atpH PE=3 SV=1 ATPD_LACJO - ATP synthase subunit delta OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN=atpH ...	8.0E-45	[1..180]	[3..182]
ATPD_GEOKA - ATP synthase subunit delta OS=Geobacillus kaustophilus (strain HTA426) GN=atpH PE=3 SV=1 ATPD_GEOKA - ATP synthase subunit delta OS=Geobacillus kaustophilus GN=atpH PE=3 SV=1	2.0E-44	[1..177]	[1..177]
gi\|91226235, gi\|... - gi\|91226235\|ref\|ZP_01261075.1\| F0F1 ATP synthase subunit delta [Vibrio alginolyticus 12G01], gi\|9118...	7.0E-44	[4..176]	[5..175]
ATPD_VIBAL - ATP synthase subunit delta OS=Vibrio alginolyticus GN=atpH PE=3 SV=1 gi\|116185028, gi... - gi\|75855547\|ref\|ZP_00763195.1\| COG0712: F0F1-type ATP synthase, delta subunit (mitochondrial oligomy...	7.0E-44	[4..176]	[5..175]
ATPD_GEOSE - ATP synthase subunit delta OS=Geobacillus stearothermophilus GN=atpH PE=3 SV=1	2.0E-43	[1..177]	[1..177]
ATPD_VIBPA - ATP synthase subunit delta OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=atpH P... ATPD_VIBPA - ATP synthase subunit delta OS=Vibrio parahaemolyticus GN=atpH PE=3 SV=1	2.0E-43	[4..176]	[5..175]
gi\|37681438, gi\|... - gi\|37681438\|ref\|NP_936047.1\| ATP synthase subunit D [Vibrio vulnificus YJ016], gi\|37200190\|dbj\|BAC96...	3.0E-43	[4..176]	[9..179]
gi\|86283556, gi\|... - gi\|86359454\|ref\|YP_471346.1\| F0F1 ATP synthase subunit delta [Rhizobium etli CFN 42], gi\|86283556\|gb...	6.0E-43	[4..178]	[56..231]
ATPD_VIBVU - ATP synthase subunit delta OS=Vibrio vulnificus GN=atpH PE=3 SV=1 ATPD_VIBVY - ATP synthase subunit delta OS=Vibrio vulnificus (strain YJ016) GN=atpH PE=3 SV=2 ATPD_VIBVU - ATP synthase subunit delta OS=Vibrio vulnificus (strain CMCP6) GN=atpH PE=3 SV=1	7.0E-43	[4..176]	[5..175]
gi\|77961819, gi\|... - gi\|77961819\|ref\|ZP_00825649.1\| COG0712: F0F1-type ATP synthase, delta subunit (mitochondrial oligomy...	7.0E-43	[5..176]	[6..175]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNGIVAKRY AVALFKIAKE KHVLEMFEEE LRLVQNVYEK NGELHSFLTQ PNISKEQKKT  60
   61 FLANVFGSVS ESILNTLYIL IDNKRIDILS DIANEYVVLA NEERNVADAT VYSTRLLSEE 120
  121 EKLNIAEAFA KRTGKDAIRV KNVVDEDLLG GIKVRIGNRI YDGSLQGKLA RIQRELMKNR 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.522879
Match:	1abvA
Description:	N-TERMINAL DOMAIN OF THE DELTA SUBUNIT OF THE F1F0-ATP SYNTHASE FROM ESCHERICHIA COLI, NMR, MINIMIZED AVERAGE STRUCTURE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrogen ion transporting ATP synthase activity, rotational mechanism	14.7422820889757	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	12.9278793563887	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	11.1783751674743	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	10.0680074813957	bayes_pls_golite062009
cation transmembrane transporter activity	6.33234611151135	bayes_pls_golite062009
ion transmembrane transporter activity	6.2273693570543	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	5.80354336411519	bayes_pls_golite062009
transporter activity	4.02094516916098	bayes_pls_golite062009
substrate-specific transporter activity	3.93981768923161	bayes_pls_golite062009
transmembrane transporter activity	3.93135059223129	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: