YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260006, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	469 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260006, gi|....

Description	E-value	Query Range	Subject Range
ATPB_BACCQ - ATP synthase subunit beta OS=Bacillus cereus (strain Q1) GN=atpD PE=3 SV=1 ATPB_BACC7 - ATP synthase subunit beta OS=Bacillus cereus (strain AH187) GN=atpD PE=3 SV=1 gi\|206976897, gi... - gi\|206976897\|ref\|ZP_03237799.1\| ATP synthase F1, beta subunit [Bacillus cereus H3081.97], gi\|2067448... ATPB_BACC1 - ATP synthase subunit beta OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=atpD PE=3 SV=1 gi\|229142046, gi... - gi\|229142046\|ref\|ZP_04270571.1\| ATP synthase subunit beta [Bacillus cereus BDRD-ST26], gi\|228641335\|...	0.0	[1..469]	[1..468]
ATPB_BACWK - ATP synthase subunit beta OS=Bacillus weihenstephanensis (strain KBAB4) GN=atpD PE=3 SV=1	0.0	[1..469]	[1..469]
ATPB_BACCR - ATP synthase subunit beta OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / N... gi\|47569800, gi\|... - gi\|47569800\|ref\|ZP_00240471.1\| ATP synthase F1, beta subunit [Bacillus cereus G9241], gi\|47553542\|gb... ATPB_BACC4 - ATP synthase subunit beta OS=Bacillus cereus (strain B4264) GN=atpD PE=3 SV=1 gi\|229112719, gi... - gi\|229112719\|ref\|ZP_04242252.1\| ATP synthase subunit beta [Bacillus cereus Rock1-15], gi\|228670700\|g... gi\|228635496, gi... - gi\|229147846\|ref\|ZP_04276187.1\| ATP synthase subunit beta [Bacillus cereus BDRD-ST24], gi\|228635496\|...	0.0	[1..469]	[1..468]
ATPB_BACCN - ATP synthase subunit beta OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-...	0.0	[1..469]	[1..464]
gi\|229331213, gi... - gi\|229497787\|ref\|ZP_04391486.1\| ATP synthase F1, beta subunit [Geobacillus sp. Y412MC52], gi\|2293312... ATPB_GEOKA - ATP synthase subunit beta OS=Geobacillus kaustophilus (strain HTA426) GN=atpD PE=1 SV=1 ATPB_GEOKA - ATP synthase subunit beta OS=Geobacillus kaustophilus GN=atpD PE=3 SV=1 gi\|220709127, gi... - gi\|221087074\|ref\|ZP_03556614.1\| ATP synthase F1, beta subunit [Geobacillus sp. Y412MC61], gi\|2207091...	0.0	[1..467]	[1..469]
ATPB_GEOTH - ATP synthase subunit beta OS=Geobacillus thermoleovorans GN=atpD PE=3 SV=1	0.0	[1..467]	[1..469]
gi\|86605139 - gi\|86605139\|ref\|YP_473902.1\| ATP synthase F1, beta subunit [Cyanobacteria bacterium Yellowstone A-Pr... ATPB_SYNJA - ATP synthase subunit beta OS=Synechococcus sp. (strain JA-3-3Ab) GN=atpD PE=3 SV=1	0.0	[2..467]	[10..474]
ATPB_BACHD - ATP synthase subunit beta OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM ... ATPB_BACHD - ATP synthase subunit beta OS=Bacillus halodurans GN=atpD PE=3 SV=1	0.0	[1..467]	[1..469]
gi\|61968281 - gi\|61968281\|gb\|AAX57067.1\| ATP synthase beta subunit [Petalodiscus fadenii]	0.0	[2..464]	[7..475]
ATPB_AGAAF - ATP synthase subunit beta, chloroplastic OS=Agapanthus africanus GN=atpB PE=3 SV=1	0.0	[2..467]	[19..490]

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Predicted Domain #1

Region A:
Residues: [1-469]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKGRVTQIM GPVVDVKFDG GKLPEIYNAL TVKQSNENGT SINLTFEVAL HLGDDTVRTV  60
   61 AMSSTDGLVR GTEVEDTGKA ISVPVGDATL GRVFNVLGDA IDLDGEVPAD VRRDPIHRQA 120
  121 PAFEELSTKV EILETGIKVV DLLAPYIKGG KIGLFGGAGV GKTVLIQELI NNIAQEHGGI 180
  181 SVFAGVGERT REGNDLYHEM SDSGVIKKTA MVFGQMNEPP GARQRVALTG LTMAEHFRDE 240
  241 QGQDVLLFID NIFRFTQAGS EVSALLGRMP SAVGYQPTLA TEMGQLQERI TSTNKGSITS 300
  301 IQAVYVPADD YTDPAPATTF AHLDATTNLE RRLTQMGIYP AVDPLASTSR ALSPEIVGEE 360
  361 HYEVARQVQQ TLQRYKELQD IIAILGMDEL SEEDKLVVHR ARRIQFFLSQ NFHVAEQFTG 420
  421 QKGSYVPVKE TVRGFKEILE GKYDDLPEDA FRLVGGIEEV IENAKKMMA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2qe7D
Description:	No description for 2qe7D was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits