YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259891, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	180 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259891, gi|....

Description	E-value	Query Range	Subject Range
gi\|228771268, gi... - gi\|228988412\|ref\|ZP_04148503.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar tochigi... gi\|217962670, gi... - gi\|217962670\|ref\|YP_002341244.1\| ribosomal subunit interface protein [Bacillus cereus AH187], gi\|217... gi\|229158753, gi... - gi\|229158753\|ref\|ZP_04286811.1\| Ribosome-associated factor Y [Bacillus cereus ATCC 4342], gi\|2286247... gi\|222098642, gi... - gi\|222098642\|ref\|YP_002532700.1\| ribosomal subunit interface protein [Bacillus cereus Q1], gi\|221242... gi\|228641531, gi... - gi\|229141916\|ref\|ZP_04270442.1\| Ribosome-associated factor Y [Bacillus cereus BDRD-ST26], gi\|2286415... gi\|47569295, gi\|... - gi\|47569295\|ref\|ZP_00239980.1\| ribosomal subunit interface protein [Bacillus cereus G9241], gi\|47568...	2.0E-62	[1..180]	[1..180]
gi\|163865071, gi... - gi\|89205055\|ref\|ZP_01183628.1\| Sigma 54 modulation protein/ribosomal protein S30EA [Bacillus weihens... gi\|229014357, gi... - gi\|229014357\|ref\|ZP_04171476.1\| Ribosome-associated factor Y [Bacillus mycoides DSM 2048], gi\|228746...	7.0E-62	[1..180]	[1..180]
gi\|89201187, gi\|... - gi\|89201187\|ref\|ZP_01179933.1\| Sigma 54 modulation protein/ribosomal protein S30EA [Bacillus cereus ...	3.0E-60	[1..180]	[1..179]
gi\|42784341, gi\|... - gi\|42784341\|ref\|NP_981588.1\| ribosomal subunit interface protein [Bacillus cereus ATCC 10987], gi\|42... gi\|228584165, gi... - gi\|229199305\|ref\|ZP_04325972.1\| Ribosome-associated factor Y [Bacillus cereus m1293], gi\|228584165\|g... gi\|228823307, gi... - gi\|228936475\|ref\|ZP_04099273.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar andalou... gi\|206976850, gi... - gi\|206976850\|ref\|ZP_03237753.1\| ribosomal subunit interface protein [Bacillus cereus H3081.97], gi\|2... gi\|49481144, gi\|... - gi\|49481144\|ref\|YP_039178.1\| ribosomal subunit interface protein [Bacillus thuringiensis serovar kon...	9.0E-59	[1..180]	[1..180]
gi\|228911022, gi... - gi\|228911022\|ref\|ZP_04074830.1\| Ribosome-associated factor Y [Bacillus thuringiensis IBL 200], gi\|22... gi\|228903662, gi... - gi\|228903662\|ref\|ZP_04067782.1\| Ribosome-associated factor Y [Bacillus thuringiensis IBL 4222], gi\|2... gi\|228791463, gi... - gi\|228968290\|ref\|ZP_04129288.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar sotto s... gi\|218543998, gi... - gi\|218900308\|ref\|YP_002448719.1\| ribosomal subunit interface protein [Bacillus cereus G9842], gi\|218... gi\|75759029, gi\|... - gi\|75759029\|ref\|ZP_00739137.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar israelen...	1.0E-58	[1..180]	[1..180]
gi\|228722505, gi... - gi\|229050849\|ref\|ZP_04194401.1\| Ribosome-associated factor Y [Bacillus cereus AH676], gi\|228722505\|g... gi\|228961425, gi... - gi\|228961425\|ref\|ZP_04123038.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar pakista... gi\|228923913, gi... - gi\|228923913\|ref\|ZP_04087190.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar huazhon... gi\|229153343, gi... - gi\|229153343\|ref\|ZP_04281521.1\| Ribosome-associated factor Y [Bacillus cereus m1550], gi\|228629947\|g... gi\|229147718, gi... - gi\|229147718\|ref\|ZP_04276061.1\| Ribosome-associated factor Y [Bacillus cereus BDRD-ST24], gi\|2286357... gi\|30023223, gi\|... - gi\|30023223\|ref\|NP_834854.1\| sigma (54) modulation protein / SSU ribosomal protein S30P [Bacillus ce... gi\|228653029, gi... - gi\|229130434\|ref\|ZP_04259391.1\| Ribosome-associated factor Y [Bacillus cereus BDRD-Cer4], gi\|2286530... gi\|229112596, gi... - gi\|229112596\|ref\|ZP_04242133.1\| Ribosome-associated factor Y [Bacillus cereus Rock1-15], gi\|22867097... gi\|218234476, gi... - gi\|218234476\|ref\|YP_002369963.1\| ribosomal subunit interface protein [Bacillus cereus B4264], gi\|218...	4.0E-58	[1..180]	[1..180]
gi\|68007762, gi\|... - gi\|68055627\|ref\|ZP_00539770.1\| Sigma 54 modulation protein/ribosomal protein S30EA [Exiguobacterium ...	5.0E-56	[1..180]	[1..187]
gi\|28210085, gi\|... - gi\|28210085\|ref\|NP_781029.1\| SSU ribosomal protein S30P [Clostridium tetani E88], gi\|28202521\|gb\|AAO...	1.0E-55	[1..180]	[1..175]
gi\|89084655, gi\|... - gi\|89100631\|ref\|ZP_01173489.1\| ribosomal subunit interface protein [Bacillus sp. NRRL B-14911], gi\|8...	2.0E-55	[1..180]	[1..184]
gi\|22778184, gi\|... - gi\|23099953\|ref\|NP_693419.1\| hypothetical protein OB2498 [Oceanobacillus iheyensis HTE831], gi\|22778...	3.0E-55	[1..179]	[1..183]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFNIRGENI EVTPALKEYV EKKLSKLERY FDTFPEIKVN LKVYSDKQRV EVTIPFTDLL  60
   61 LRAEETNSDM YAAIDLVVDK LERQIRKHKT KVNRKLREKG SMKTNFILPE AVAVLDAVEE 120
  121 DELELVRTKR FDLKPMDVEE AILQMDMLGH NFFVFTNADT NETNVVYGRK DGKYGLIETK 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.154902
Match:	1n3gA
Description:	Ribosome binding protein Y (YfiA homologue)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.47304811799096	bayes_pls_golite062009
protein binding	0.411183424287687	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: