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View Structure Prediction Details

Protein: gi|30265031, gi|...
Organism: Bacillus anthracis str. Ames
Length: 127 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30265031, gi|....

Description E-value Query
Range		 Subject
Range
gi|85719356 - gi|85719356|gb|ABC75361.1| 2-oxo acid dehydrogenase, lipoyl-binding site [Medicago truncatula]
 1.0E-41 [2..127] [26..151]
gi|886868, gi|13... - gi|886868|emb|CAA88734.1| H-protein precursor of glycine cleavage system [Flaveria trinervia], pir||...
 1.0E-41 [2..127] [33..158]
GCSH_ORYSI - Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. indica GN=GDCSH PE=2 SV=1
GCSH_ORYSA - Glycine cleavage system H protein, mitochondrial precursor - Oryza sativa (Rice)
GCSH_ORYSJ - Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. japonica GN=GDCSH PE=1 SV=1
 2.0E-41 [2..127] [36..161]
GCSH_FLAPR - Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei GN=GDCSH PE=2 SV=1
 2.0E-41 [2..127] [33..158]
GCSH_FLAAN - Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala GN=GDCSH PE=2 SV=1
 2.0E-41 [2..127] [33..158]
gi|437993, gi|21... - gi|437993|emb|CAA81073.1| H-protein [Flaveria cronquistii], pir||S60195 glycine cleavage system prot...
gi|437999, gi|36... - pir||S60199 glycine cleavage system protein H precursor (clone HFP20) - Flaveria pringlei, gi|43799...
 3.0E-41 [2..127] [33..158]

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Predicted Domain #1
Region A:
Residues: [1-127] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIPNNLRYS EEHEWVKTEG NEVVIGITHF AQNELGDIVF VELPEVGATI EADEPFGSVE  60
   61 SVKTVSELYA PVSGKVVAVN EELSDQPELV NESPYEGAWM VKVELSDASQ VEKLLTAEKY 120
  121 AEMTNQD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.69897
Match: 1dxmA
Description: Protein H of glycine cleavage system
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
aminomethyltransferase activity 7.15454688996532 bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity 6.56199545993139 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor 6.56199545993139 bayes_pls_golite062009
acetyl-CoA carboxylase activity 2.30995434688093 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors 1.93346020821958 bayes_pls_golite062009
CoA carboxylase activity 1.92420834470262 bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds 1.62422217856347 bayes_pls_golite062009
catalytic activity 1.39099902011318 bayes_pls_golite062009
ligase activity 0.56894584941056 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle