YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264480, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	298 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264480, gi|....

Description	E-value	Query Range	Subject Range
gi\|47556629, gi\|... - gi\|47566599\|ref\|ZP_00237421.1\| cobalt-zinc-cadmium resistance protein czcD [Bacillus cereus G9241], ...	6.0E-61	[1..298]	[1..298]
gi\|42783540, gi\|... - gi\|42783540\|ref\|NP_980787.1\| cation efflux family protein [Bacillus cereus ATCC 10987], gi\|42739469\|...	9.0E-61	[1..298]	[1..298]
gi\|218905605, gi... - gi\|218905605\|ref\|YP_002453439.1\| cation efflux family protein [Bacillus cereus AH820], gi\|218539265\|... gi\|196039152, gi... - gi\|196039152\|ref\|ZP_03106458.1\| cation efflux family protein [Bacillus cereus NVH0597-99], gi\|196029... gi\|228811482, gi... - gi\|228948124\|ref\|ZP_04110408.1\| Cation efflux system [Bacillus thuringiensis serovar monterrey BGSC ... gi\|167636511, gi... - gi\|167636511\|ref\|ZP_02394808.1\| cation efflux family protein [Bacillus anthracis str. A0442], gi\|167... gi\|228830243, gi... - gi\|228929455\|ref\|ZP_04092476.1\| Cation efflux system [Bacillus thuringiensis serovar pondicheriensis... gi\|225866391, gi... - gi\|225866391\|ref\|YP_002751769.1\| cation efflux family protein [Bacillus cereus 03BB102], gi\|22578641... gi\|254741550 - gi\|254741550\|ref\|ZP_05199237.1\| cation efflux family protein [Bacillus anthracis str. Kruger B] gi\|254736512 - gi\|254736512\|ref\|ZP_05194218.1\| cation efflux family protein [Bacillus anthracis str. Western North ... gi\|229123951, gi... - gi\|229123951\|ref\|ZP_04253143.1\| Cation efflux system [Bacillus cereus 95/8201], gi\|228659253\|gb\|EEL1... gi\|228689952, gi... - gi\|229093481\|ref\|ZP_04224584.1\| Cation efflux system [Bacillus cereus Rock3-42], gi\|228689952\|gb\|EEL... gi\|254757683 - gi\|254757683\|ref\|ZP_05209710.1\| cation efflux family protein [Bacillus anthracis str. Australia 94] gi\|49481497, gi\|... - gi\|49481497\|ref\|YP_038460.1\| cation efflux family protein; cobalt-zinc-cadmium resistance protein [B... gi\|254751351 - gi\|254751351\|ref\|ZP_05203388.1\| cation efflux family protein [Bacillus anthracis str. Vollum]	2.0E-60	[2..298]	[1..297]
gi\|89153420, gi\|... - gi\|89208651\|ref\|ZP_01187146.1\| Cation efflux protein [Bacillus weihenstephanensis KBAB4], gi\|8915342...	2.0E-60	[2..298]	[1..297]
gi\|229129690, gi... - gi\|229129690\|ref\|ZP_04258658.1\| Cation efflux system [Bacillus cereus BDRD-Cer4], gi\|228653807\|gb\|EE... gi\|228671638, gi... - gi\|229111882\|ref\|ZP_04241428.1\| Cation efflux system [Bacillus cereus Rock1-15], gi\|228671638\|gb\|EEL... gi\|229048119, gi... - gi\|229048119\|ref\|ZP_04193690.1\| Cation efflux system [Bacillus cereus AH676], gi\|228723222\|gb\|EEL745... gi\|228836541, gi... - gi\|228923162\|ref\|ZP_04086453.1\| Cation efflux system [Bacillus thuringiensis serovar huazhongensis B... gi\|30022485, gi\|... - gi\|30022485\|ref\|NP_834116.1\| cobalt-zinc-cadmium resistance protein czcD [Bacillus cereus ATCC 14579... gi\|229146981, gi... - gi\|229146981\|ref\|ZP_04275343.1\| Cation efflux system [Bacillus cereus BDRD-ST24], gi\|228636478\|gb\|EE...	3.0E-60	[2..298]	[1..297]
gi\|56421116, gi\|... - gi\|56421116\|ref\|YP_148434.1\| cation efflux transporter (cadmium/zinc/cobalt) [Geobacillus kaustophil...	3.0E-60	[2..297]	[1..296]
gi\|89100789, gi\|... - gi\|89100789\|ref\|ZP_01173642.1\| cation efflux transporter (cadmium/zinc/cobalt) [Bacillus sp. NRRL B-...	5.0E-60	[1..297]	[1..297]
gi\|74491940, gi\|... - gi\|75760571\|ref\|ZP_00740604.1\| Cobalt-zinc-cadmium resistance protein czcD [Bacillus thuringiensis s... gi\|228967486, gi... - gi\|228967486\|ref\|ZP_04128514.1\| Cation efflux system [Bacillus thuringiensis serovar sotto str. T040... gi\|228902938, gi... - gi\|228902938\|ref\|ZP_04067079.1\| Cation efflux system [Bacillus thuringiensis IBL 4222], gi\|228856722...	7.0E-60	[2..298]	[1..297]
gi\|89150561, gi\|... - gi\|89201351\|ref\|ZP_01180092.1\| Cation efflux protein [Bacillus cereus subsp. cytotoxis NVH 391-98], ...	9.0E-59	[2..298]	[1..297]
gi\|19917408, gi\|... - gi\|20092180\|ref\|NP_618255.1\| cation efflux system protein (cadmium/zinc/cobalt) [Methanosarcina acet...	5.0E-57	[2..295]	[1..296]

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Predicted Domain #1

Region A:
Residues: [1-298]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMEKDERFKQ AEFGAIVGIV GNIILAIIKA VIGYIGNSKA LLADAVHSAS DVIGSLAVLF  60
   61 GLRAAKQPPD EDHPYGHGKA ESISAIIVAV LLFIVGIEIA ISSIKAFSQE LEPPKGITIF 120
  121 AVVLSIVVKE GMFQYKFRLG KRVNSDAIIA NAYEHRSDVF SSIAALIGIC AAIIGGKFGL 180
  181 DWLVYADPIA GLFVSLLVAK MAWSIGAEAI HATLDHVLHE EDVIPLREAV LQIDGVKKIG 240
  241 SLYAREHGHY VIVDIKVSVD PYITVEEGHR IGKHVKETLM KQDNVQNVFV HINPYSPN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.30103
Match:	2qfiA
Description:	No description for 2qfiA was found.

Predicted functions:

Term	Confidence	Notes
cation transmembrane transporter activity	4.80415740186568	bayes_pls_golite062009
ion transmembrane transporter activity	4.7111088918389	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	4.31582321262476	bayes_pls_golite062009
cadmium ion transmembrane transporter activity	3.70168909103546	bayes_pls_golite062009
transporter activity	2.75060749825863	bayes_pls_golite062009
transmembrane transporter activity	2.61478776136804	bayes_pls_golite062009
substrate-specific transporter activity	2.49211952065411	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	1.29284396884348	bayes_pls_golite062009
iron ion transmembrane transporter activity	1.28901626534199	bayes_pls_golite062009
efflux transmembrane transporter activity	1.25549862417229	bayes_pls_golite062009
metal ion transmembrane transporter activity	1.01332825422669	bayes_pls_golite062009
binding	0.80253540865533	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	0.4725448545847	bayes_pls_golite062009
cation channel activity	0.114605430567645	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	0.0866732167896778	bayes_pls_golite062009
protein binding	0.0557829197821959	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: