YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42738944, gi\|...
Organism:	Bacillus cereus ATCC 10987
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42738944, gi|....

Description	E-value	Query Range	Subject Range
gi\|47565796, gi\|... - gi\|47565796\|ref\|ZP_00236835.1\| ribosomal protein L32-related protein [Bacillus cereus G9241], gi\|475...	121.0	[0..8]	[92..1]
gi\|65321250 - gi\|65321250\|ref\|ZP_00394209.1\| COG0333: Ribosomal protein L32 [Bacillus anthracis str. A2012]	115.0	[0..12]	[92..1]
gi\|3006125 - gi\|3006125\|emb\|CAA06176.1\| hypothetical protein [Thermoanaerobacterium thermosaccharolyticum] gi\|3006125\|emb\|C... - hypothetical protein [Thermoanaerobacterium thermosaccharolyticum]	110.0	[0..25]	[91..158]
RL32_JANSC - 50S ribosomal protein L32 OS=Jannaschia sp. (strain CCS1) GN=rpmF PE=3 SV=1	102.0	[0..36]	[92..1]
RL32_SILPO - 50S ribosomal protein L32 OS=Silicibacter pomeroyi GN=rpmF PE=3 SV=1 RL32_RUEPO - 50S ribosomal protein L32 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=rpmF PE=3...	98.0	[0..36]	[92..1]
RL32_PARDP - 50S ribosomal protein L32 OS=Paracoccus denitrificans (strain Pd 1222) GN=rpmF PE=3 SV=1	98.0	[0..36]	[92..1]
RL32_RHOS5 - 50S ribosomal protein L32 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpmF PE=3 SV...	98.0	[0..36]	[91..1]
RL32_RHOCA - 50S ribosomal protein L32 OS=Rhodobacter capsulatus GN=rpmF PE=3 SV=3	97.0	[0..36]	[92..1]
RL32_MAGSA - 50S ribosomal protein L32 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpmF PE=3 S... gi\|46201736 - gi\|46201736\|ref\|ZP_00208230.1\| COG0333: Ribosomal protein L32 [Magnetospirillum magnetotacticum MS-1...	97.0	[0..36]	[92..1]
gi\|15887467, gi\|... - gi\|15887467\|ref\|NP_353148.1\| 50S ribosomal protein L32 [Agrobacterium tumefaciens str. C58], gi\|1515... gi\|25519844 - gi\|25519844\|pir\|\|D97372 50S ribosomal protein L32 [imported] - Agrobacterium tumefaciens (strain C58...	97.0	[0..24]	[91..24]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQDWQDLQS FLTNNRKTGS GLHMKITISF KEVGRMAVPF RRTSKTVKRK RRTHFKLSVP  60
   61 GMVECPSCGE AKLAHRVCKA CGTYKGKEVI SK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.39794
Match:	1j5aM
Description:	50S subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits