YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258517, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	70 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258517, gi|....

Description	E-value	Query Range	Subject Range
RPOZ_HALHL - DNA-directed RNA polymerase subunit omega OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rpoZ...	103.0	[0..1]	[64..1]
RPOZ_PSYA2 - DNA-directed RNA polymerase subunit omega OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rp... RPOZ_PSYAR - DNA-directed RNA polymerase subunit omega - Psychrobacter arcticum RPOZ_PSYCK - DNA-directed RNA polymerase subunit omega OS=Psychrobacter cryohalolentis (strain K5) GN=rpoZ PE=3 S...	103.0	[0..1]	[66..1]
RPOZ_HAHCH - DNA-directed RNA polymerase subunit omega OS=Hahella chejuensis (strain KCTC 2396) GN=rpoZ PE=3 SV=1	103.0	[0..1]	[68..1]
gi\|88700539, gi\|... - gi\|88705449\|ref\|ZP_01103160.1\| RNA polymerase Rpb6 [gamma proteobacterium KT 71], gi\|88700539\|gb\|EAQ...	103.0	[0..1]	[66..1]
gi\|71554209, gi\|... - gi\|71733656\|ref\|YP_272503.1\| DNA-directed RNA polymerase subunit omega [Pseudomonas syringae pv. pha...	102.0	[0..1]	[69..27]
gi\|67154922, gi\|... - gi\|67154922\|ref\|ZP_00416667.1\| RNA polymerase, omega subunit [Azotobacter vinelandii AvOP], ref\|ZP_0... RPOZ_AZOVD - DNA-directed RNA polymerase subunit omega OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=r...	102.0	[0..1]	[69..1]
RPOZ_PSYWF - DNA-directed RNA polymerase subunit omega OS=Psychrobacter sp. (strain PRwf-1) GN=rpoZ PE=3 SV=1	101.0	[0..1]	[66..1]
gi\|108792614 - gi\|108792614\|dbj\|BAE95779.1\| DNA-directed RNA polymerase omega subunit [Pseudomonas sp. MIS38] RPOZ_PSEPF - DNA-directed RNA polymerase subunit omega OS=Pseudomonas fluorescens (strain Pf0-1) GN=rpoZ PE=3 SV=...	101.0	[0..1]	[69..1]
gi\|70733345, gi\|... - gi\|70733345\|ref\|YP_263120.1\| DNA-directed RNA polymerase subunit omega [Pseudomonas fluorescens Pf-5...	101.0	[0..1]	[69..20]
gi\|90332797, gi\|... - gi\|90415474\|ref\|ZP_01223408.1\| RNA polymerase, omega subunit [marine gamma proteobacterium HTCC2207]... gi\|90415474\|ref\|... - RNA polymerase, omega subunit [marine gamma proteobacterium HTCC2207]	101.0	[0..1]	[67..16]

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Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNPSIDSLL TKIDSKYTLV TVAAKRAREM QLANNCVVEK PVSHKCVGKA LEEIDMEALS  60
   61 YVPSEDKVTE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.64
Match:	2o5iE
Description:	No description for 2o5iE was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits