YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262758, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	401 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262758, gi|....

Description	E-value	Query Range	Subject Range
gi\|229079977, gi... - gi\|229079977\|ref\|ZP_04212508.1\| Glycine betaine transport ATP-binding protein opuAA [Bacillus cereus... gi\|228724847, gi... - gi\|229046485\|ref\|ZP_04192140.1\| Glycine betaine transport ATP-binding protein opuAA [Bacillus cereus... gi\|228953121, gi... - gi\|228953121\|ref\|ZP_04115180.1\| Glycine betaine transport ATP-binding protein opuAA [Bacillus thurin... gi\|228632558, gi... - gi\|229150998\|ref\|ZP_04279209.1\| Glycine betaine transport ATP-binding protein opuAA [Bacillus cereus... gi\|229145362, gi... - gi\|229145362\|ref\|ZP_04273751.1\| Glycine betaine transport ATP-binding protein opuAA [Bacillus cereus... gi\|228655404, gi... - gi\|229128129\|ref\|ZP_04257111.1\| Glycine betaine transport ATP-binding protein opuAA [Bacillus cereus... gi\|228673223, gi... - gi\|229110237\|ref\|ZP_04239811.1\| Glycine betaine transport ATP-binding protein opuAA [Bacillus cereus... gi\|218234904, gi... - gi\|218234904\|ref\|YP_002367504.1\| glycine betaine/L-proline ABC transporter, ATP-binding protein [Bac... gi\|229190885, gi... - gi\|229190885\|ref\|ZP_04317876.1\| Glycine betaine transport ATP-binding protein opuAA [Bacillus cereus... gi\|206971764, gi... - gi\|206971764\|ref\|ZP_03232713.1\| glycine betaine/L-proline ABC transporter, ATP-binding protein [Baci... gi\|229179072, gi... - gi\|229179072\|ref\|ZP_04306429.1\| Glycine betaine transport ATP-binding protein opuAA [Bacillus cereus... gi\|30020912, gi\|... - gi\|30020912\|ref\|NP_832543.1\| glycine betaine transport ATP-binding protein [Bacillus cereus ATCC 145...	3.0E-80	[1..401]	[1..401]
gi\|228908531, gi... - gi\|228908531\|ref\|ZP_04072371.1\| Glycine betaine transport ATP-binding protein opuAA [Bacillus thurin... gi\|228901326, gi... - gi\|228901326\|ref\|ZP_04065519.1\| Glycine betaine transport ATP-binding protein opuAA [Bacillus thurin... gi\|218540679, gi... - gi\|218897810\|ref\|YP_002446221.1\| glycine betaine/L-proline ABC transporter, ATP-binding protein [Bac... gi\|75763453, gi\|... - gi\|75763453\|ref\|ZP_00743176.1\| Glycine betaine transport ATP-binding protein [Bacillus thuringiensis...	4.0E-80	[1..401]	[1..401]
gi\|65320083, gi\|... - gi\|65320083\|ref\|ZP_00393042.1\| COG4175: ABC-type proline/glycine betaine transport system, ATPase co...	4.0E-80	[1..401]	[1..401]
gi\|15073645 - gi\|15073645\|emb\|CAC45287.1\| Probable putrescine transport ATP-binding protein [Sinorhizobium melilot... gi\|15964468 - gi\|15964468\|ref\|NP_384821.1\| putrescine ABC transporter ATP-binding protein [Sinorhizobium meliloti ...	5.0E-80	[8..369]	[2..363]
gi\|228773809, gi... - gi\|228985880\|ref\|ZP_04146028.1\| Glycine betaine transport ATP-binding protein opuAA [Bacillus thurin... gi\|47569050, gi\|... - gi\|47569050\|ref\|ZP_00239740.1\| amino acid ABC transporter, ATP-binding protein [Bacillus cereus G924...	7.0E-80	[1..401]	[1..401]
gi\|229139424, gi... - gi\|229139424\|ref\|ZP_04267995.1\| Glycine betaine transport ATP-binding protein opuAA [Bacillus cereus... gi\|42737797, gi\|... - gi\|42781873\|ref\|NP_979120.1\| glycine betaine/L-proline ABC transporter, ATP-binding protein [Bacillu... gi\|222096289, gi... - gi\|222096289\|ref\|YP_002530346.1\| glycine betaine/L-proline ABC transporter, ATP-binding protein [Bac... gi\|217066988, gi... - gi\|217960228\|ref\|YP_002338788.1\| glycine betaine/L-proline ABC transporter, ATP-binding protein [Bac... gi\|206747942, gi... - gi\|206973786\|ref\|ZP_03234704.1\| glycine betaine/L-proline ABC transporter, ATP-binding protein [Baci...	8.0E-80	[1..401]	[1..401]
gi\|228615949, gi... - gi\|229167387\|ref\|ZP_04295125.1\| Glycine betaine transport ATP-binding protein opuAA [Bacillus cereus... gi\|228649710, gi... - gi\|229133675\|ref\|ZP_04262501.1\| Glycine betaine transport ATP-binding protein opuAA [Bacillus cereus... gi\|89207415, gi\|... - gi\|89207415\|ref\|ZP_01185957.1\| Glycine betaine/L-proline transport ATP-binding subunit [Bacillus wei...	9.0E-80	[1..401]	[1..401]
gi\|113726386, gi... - gi\|150395538\|ref\|YP_001326005.1\| spermidine/putrescine ABC transporter ATPase subunit [Sinorhizobium...	1.0E-79	[8..369]	[1..362]
gi\|116250536, gi... - gi\|116250536\|ref\|YP_766374.1\| putrescine ABC transporter ATP-binding protein [Rhizobium leguminosaru...	1.0E-79	[8..363]	[1..354]
gi\|91191344, gi\|... - gi\|91223852\|ref\|ZP_01259116.1\| ABC superfamily (glycine/betaine/proline transport protein) [Vibrio a...	2.0E-79	[3..389]	[2..392]

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Predicted Domain #1

Region A:
Residues: [1-341]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNTKVRVEN VTKVFGKHPQ RALSLLKEGK SKSEILKETG MNVGVKKATF EVYSGEIFVI  60
   61 MGLSGSGKST LVRMLNQLIK PTAGHIYIDG EDIATMGKEE LRRVRRTKMS MVFQKFALFP 120
  121 HRTVLQNVAY GLEIQGVPVE EREKKALESL KLVGLDHHKD NYPSQLSGGM QQRVGIARAL 180
  181 TNDPDVLLMD ESFSALDPLI RKEMQDELLE LQDKMEKTII FITHDLDEAL RIGDRIALMK 240
  241 DGEVVQIGTP EEIMMSPANE FVEKFVADVN LGKVITAESI LKRPETLLID RGPRVALQIM 300
  301 RNAGVSTVYV VNKKYEFLGI LTADDASKAV QKQWPIADLL L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.0
Match:	1z47A
Description:	Structure of the ATPase subunit CysA of the putative sulfate ATP-binding cassette (ABC) transporter from Alicyclobacillus acidocaldarius
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [342-401]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDIPHVYLDT LLEETYAKMA EMKYPLPVID EKKRLRGIIK RESVIQALAG NIEEEVKDDE  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.67
Match:	2ef7A
Description:	No description for 2ef7A was found.

Predicted functions:

Term	Confidence	Notes
ion transmembrane transporter activity	4.17415099132631	bayes_pls_golite062009
anion transmembrane transporter activity	3.84266520663788	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.7951777900928	bayes_pls_golite062009
metal ion transmembrane transporter activity	3.53731101021865	bayes_pls_golite062009
cation transmembrane transporter activity	3.52290492706928	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	2.92866387500535	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	2.34783427923532	bayes_pls_golite062009
voltage-gated ion channel activity	2.27695948442866	bayes_pls_golite062009
voltage-gated channel activity	2.2757779102688	bayes_pls_golite062009
transporter activity	2.13209559322413	bayes_pls_golite062009
ion channel activity	2.07988453796083	bayes_pls_golite062009
transmembrane transporter activity	2.01417624204892	bayes_pls_golite062009
substrate-specific channel activity	2.00281800370123	bayes_pls_golite062009
channel activity	1.99143240872116	bayes_pls_golite062009
passive transmembrane transporter activity	1.99143240872116	bayes_pls_golite062009
substrate-specific transporter activity	1.96734242101392	bayes_pls_golite062009
adenyl ribonucleotide binding	1.93406862108105	bayes_pls_golite062009
adenyl nucleotide binding	1.89537008117642	bayes_pls_golite062009
ATP binding	1.87678382191025	bayes_pls_golite062009
chloride channel activity	1.85198778063257	bayes_pls_golite062009
anion channel activity	1.85198778063257	bayes_pls_golite062009
gated channel activity	1.70572315395623	bayes_pls_golite062009
nucleotide binding	1.65493121030168	bayes_pls_golite062009
ribonucleotide binding	1.62260821914371	bayes_pls_golite062009
purine ribonucleotide binding	1.62072754505551	bayes_pls_golite062009
protein kinase activity	1.59149033906294	bayes_pls_golite062009
purine nucleotide binding	1.58689382173523	bayes_pls_golite062009
protein serine/threonine kinase activity	1.24098268445132	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	1.24010677679054	bayes_pls_golite062009
kinase activity	1.0986612409034	bayes_pls_golite062009
voltage-gated anion channel activity	0.96133139347614	bayes_pls_golite062009
voltage-gated chloride channel activity	0.96133139347614	bayes_pls_golite062009
magnesium ion transmembrane transporter activity	0.94624800680363	bayes_pls_golite062009
AMP-activated protein kinase activity	0.782349940987053	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.736060269375585	bayes_pls_golite062009
binding	0.322547044129469	bayes_pls_golite062009
kinase binding	0.317507031521311	bayes_pls_golite062009
protein kinase binding	0.278011526888114	bayes_pls_golite062009
catalytic activity	0.205284274859133	bayes_pls_golite062009
protein binding	0.0852152761338402	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: