YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|51976904, gi\|...
Organism:	Bacillus cereus E33L
Length:	70 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51976904, gi|....

Description	E-value	Query Range	Subject Range
SAS2_BACME - Small, acid-soluble spore protein C2 OS=Bacillus megaterium GN=SASP-C2 PE=3 SV=1	107.0	[0..1]	[70..1]
gi\|56911410, gi\|... - gi\|56965166\|ref\|YP_176898.1\| small acid-soluble spore protein [Bacillus clausii KSM-K16], gi\|5691141...	106.0	[0..3]	[67..1]
SSPB_BACSU - Small, acid-soluble spore protein B OS=Bacillus subtilis (strain 168) GN=sspB PE=3 SV=1 gi\|221322334 - gi\|221322334\|ref\|ZP_03603628.1\| small acid-soluble spore protein (beta-type SASP) [Bacillus subtilis... gi\|221318060 - gi\|221318060\|ref\|ZP_03599354.1\| small acid-soluble spore protein (beta-type SASP) [Bacillus subtilis... SAS2_BACSU, SSPB... - Small, acid-soluble spore protein B OS=Bacillus subtilis GN=sspB PE=3 SV=1, (P04832) Small, acid-sol... gi\|221313136 - gi\|221313136\|ref\|ZP_03594941.1\| small acid-soluble spore protein (beta-type SASP) [Bacillus subtilis...	104.0	[0..3]	[69..1]
gi\|25299033 - pir\|\|B83792 small acid-soluble spore protein (major alpha-type SASP) sspA [imported] - Bacillus halo... gi\|15613701, gi\|... - gi\|15613701\|ref\|NP_242004.1\| small acid-soluble spore protein (major alpha-type SASP) [Bacillus halo...	104.0	[0..4]	[70..1]
gi\|3688809 - gi\|3688809\|gb\|AAC62407.1\| SspA [Bacillus firmus]	104.0	[0..3]	[66..1]
gi\|22776814 - gi\|22776814\|dbj\|BAC13089.1\| small acid-soluble spore protein 1 (alpha:beta-type) [Oceanobacillus ihe...	104.0	[0..1]	[66..9]
gi\|89087641, gi\|... - gi\|89097782\|ref\|ZP_01170670.1\| small acid-soluble spore protein [Bacillus sp. NRRL B-14911], gi\|8908...	104.0	[0..3]	[66..1]

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Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMARNRNSN QLASHGAQAA LDQMKYEIAQ EFGVQLGADT SSRANGSVGG EITKRLVAMA  60
   61 EQQLGGGYTR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	34.376751
Match:	PF00269.11
Description:	No description for PF00269.11 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.781	N/A	N/A	d.58.11	EF-G/eEF-2 domains III and V
View	Download	0.603	N/A	N/A	d.58.11	EF-G/eEF-2 domains III and V
View	Download	0.576	N/A	N/A	a.156.1	S13-like H2TH domain
View	Download	0.573	N/A	N/A	d.58.17	Metal-binding domain
View	Download	0.567	N/A	N/A	a.156.1	S13-like H2TH domain
View	Download	0.545	N/A	N/A	d.58.11	EF-G/eEF-2 domains III and V
View	Download	0.541	N/A	N/A	a.60.8	HRDC-like
View	Download	0.534	N/A	N/A	d.58.11	EF-G/eEF-2 domains III and V
View	Download	0.526	N/A	N/A	d.58.44	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
View	Download	0.522	N/A	N/A	d.58.11	EF-G/eEF-2 domains III and V
View	Download	0.445	N/A	N/A	d.51.1	Eukaryotic type KH-domain (KH-domain type I)
View	Download	0.434	N/A	N/A	d.58.48	MTH1187-like
View	Download	0.418	N/A	N/A	d.74.1	Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)
View	Download	0.386	N/A	N/A	d.58.48	MTH1187-like
View	Download	0.386	N/A	N/A	d.74.1	Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits