YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|51977938, gi\|...
Organism:	Bacillus cereus E33L
Length:	67 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51977938, gi|....

Description	E-value	Query Range	Subject Range
gi\|3688809 - gi\|3688809\|gb\|AAC62407.1\| SspA [Bacillus firmus]	110.0	[0..1]	[67..1]
gi\|56911410, gi\|... - gi\|56965166\|ref\|YP_176898.1\| small acid-soluble spore protein [Bacillus clausii KSM-K16], gi\|5691141...	110.0	[0..1]	[66..1]
SSPB_BACSU - Small, acid-soluble spore protein B OS=Bacillus subtilis (strain 168) GN=sspB PE=3 SV=1 gi\|221322334 - gi\|221322334\|ref\|ZP_03603628.1\| small acid-soluble spore protein (beta-type SASP) [Bacillus subtilis... gi\|221318060 - gi\|221318060\|ref\|ZP_03599354.1\| small acid-soluble spore protein (beta-type SASP) [Bacillus subtilis... SAS2_BACSU, SSPB... - Small, acid-soluble spore protein B OS=Bacillus subtilis GN=sspB PE=3 SV=1, (P04832) Small, acid-sol... gi\|221313136 - gi\|221313136\|ref\|ZP_03594941.1\| small acid-soluble spore protein (beta-type SASP) [Bacillus subtilis...	108.0	[0..1]	[67..1]
gi\|89200450, gi\|... - gi\|89200450\|ref\|ZP_01179203.1\| Small acid-soluble spore protein, alpha/beta type [Bacillus cereus su...	108.0	[0..1]	[67..1]
gi\|89087641, gi\|... - gi\|89097782\|ref\|ZP_01170670.1\| small acid-soluble spore protein [Bacillus sp. NRRL B-14911], gi\|8908...	108.0	[0..1]	[66..1]
gi\|15615764, gi\|... - gi\|15615764\|ref\|NP_244068.1\| small acid-soluble spore protein [Bacillus halodurans C-125], gi\|101758... gi\|25299034 - pir\|\|B84050 small acid-soluble spore protein BH3202 [imported] - Bacillus halodurans (strain C-125)	106.0	[0..1]	[67..1]
gi\|56379006, gi\|... - gi\|56419164\|ref\|YP_146482.1\| small acid-soluble spore protein [Geobacillus kaustophilus HTA426], gi\|... gi\|220706444, gi... - gi\|221089638\|ref\|ZP_03559152.1\| small acid-soluble spore protein alpha/beta type [Geobacillus sp. Y4... gi\|229499873, gi... - gi\|229499873\|ref\|ZP_04393551.1\| small acid-soluble spore protein alpha/beta type [Geobacillus sp. Y4...	106.0	[0..1]	[66..1]
gi\|229016187, gi... - gi\|229016187\|ref\|ZP_04173139.1\| Small, acid-soluble spore protein B [Bacillus cereus AH1273], gi\|228... gi\|229010281, gi... - gi\|229010281\|ref\|ZP_04167490.1\| Small, acid-soluble spore protein B [Bacillus mycoides DSM 2048], gi... gi\|229056622, gi... - gi\|229056622\|ref\|ZP_04196028.1\| Small, acid-soluble spore protein B [Bacillus cereus AH603], gi\|2287... gi\|229022423, gi... - gi\|229022423\|ref\|ZP_04178961.1\| Small, acid-soluble spore protein B [Bacillus cereus AH1272], gi\|228... gi\|228669124, gi... - gi\|229114445\|ref\|ZP_04243863.1\| Small, acid-soluble spore protein B [Bacillus cereus Rock1-3], gi\|22... gi\|228688039, gi... - gi\|229095493\|ref\|ZP_04226484.1\| Small, acid-soluble spore protein B [Bacillus cereus Rock3-29], gi\|2... gi\|229165793, gi... - gi\|229165793\|ref\|ZP_04293561.1\| Small, acid-soluble spore protein B [Bacillus cereus AH621], gi\|2286... gi\|229131791, gi... - gi\|229131791\|ref\|ZP_04260665.1\| Small, acid-soluble spore protein B [Bacillus cereus BDRD-ST196], gi... gi\|163938766, gi... - gi\|89205460\|ref\|ZP_01184030.1\| Small acid-soluble spore protein, alpha/beta type [Bacillus weihenste...	105.0	[0..1]	[67..1]

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Predicted Domain #1

Region A:
Residues: [1-67]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANQNSSNQL VVPGATAAID QMKYEIAQEF GVQLGADSTA RANGSVGGEI TKRLVAMAEQ  60
   61 SLGGFHK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	35.537602
Match:	PF00269.11
Description:	No description for PF00269.11 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.648	N/A	N/A	d.64.1	eIF1-like
View	Download	0.632	N/A	N/A	d.58.17	Metal-binding domain
View	Download	0.580	N/A	N/A	d.14.1	Ribosomal protein S5 domain 2-like
View	Download	0.570	N/A	N/A	a.5.10	Description not found.
View	Download	0.559	N/A	N/A	d.51.1	Eukaryotic type KH-domain (KH-domain type I)
View	Download	0.498	N/A	N/A	d.51.1	Eukaryotic type KH-domain (KH-domain type I)
View	Download	0.461	N/A	N/A	d.58.17	Metal-binding domain
View	Download	0.450	N/A	N/A	d.51.1	Eukaryotic type KH-domain (KH-domain type I)
View	Download	0.445	N/A	N/A	a.35.1	lambda repressor-like DNA-binding domains
View	Download	0.442	N/A	N/A	d.50.3	PI-Pfui intein middle domain
View	Download	0.424	N/A	N/A	d.58.11	EF-G/eEF-2 domains III and V
View	Download	0.418	N/A	N/A	d.51.1	Eukaryotic type KH-domain (KH-domain type I)
View	Download	0.395	N/A	N/A	d.51.1	Eukaryotic type KH-domain (KH-domain type I)
View	Download	0.359	N/A	N/A	d.51.1	Eukaryotic type KH-domain (KH-domain type I)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits