YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30254344, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	433 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30254344, gi|....

Description	E-value	Query Range	Subject Range
gi\|67535384, gi\|... - gi\|67543205\|ref\|ZP_00421138.1\| Xanthine/uracil/vitamin C permease [Burkholderia vietnamiensis G4], g...	2.0E-62	[2..431]	[143..565]
gi\|113531013, gi... - gi\|116696514\|ref\|YP_842090.1\| major facilitator superfamily transporter AzgA family protein [Ralston...	3.0E-58	[1..432]	[32..456]
gi\|94314734, gi\|... - gi\|94314734\|ref\|YP_587943.1\| xanthine/uracil/vitamin C permease [Ralstonia metallidurans CH34], gi\|9...	8.0E-58	[1..432]	[27..451]
gi\|72122498, gi\|... - gi\|73539161\|ref\|YP_299528.1\| xanthine/uracil/vitamin C permease:sulphate transporter [Ralstonia eutr...	1.0E-56	[1..432]	[27..451]
gi\|89087528, gi\|... - gi\|89097669\|ref\|ZP_01170557.1\| YtiP [Bacillus sp. NRRL B-14911], gi\|89087528\|gb\|EAR66641.1\| YtiP [Ba...	3.0E-56	[1..433]	[1..433]
gi\|62129968, gi\|... - gi\|62182335\|ref\|YP_218752.1\| xanthine/uracil permease family protein [Salmonella enterica subsp. ent...	8.0E-55	[1..431]	[60..484]
gi\|16504783, gi\|... - gi\|25309459\|pir\|\|AH0956 probable membrane transport protein STY3932 [imported] - Salmonella enterica... gi\|29143966, gi\|... - gi\|29143966\|ref\|NP_807308.1\| putative membrane transport protein [Salmonella enterica subsp. enteric... gi\|16762478 - gi\|16762478\|ref\|NP_458095.1\| putative membrane transport protein [Salmonella enterica subsp. enteric...	1.0E-54	[1..431]	[60..484]
gi\|16422424 - gi\|16422424\|gb\|AAL22709.1\| putative xanthine/uracil permeases family [Salmonella enterica subsp. ent... gi\|56415721, gi\|... - gi\|56415721\|ref\|YP_152796.1\| putative membrane transport protein [Salmonella enterica subsp. enteric... gi\|197364649, gi... - gi\|197364649\|ref\|YP_002144286.1\| putative membrane transport protein [Salmonella enterica subsp. ent...	1.0E-54	[1..431]	[60..484]
gi\|11279010 - pir\|\|D81776 conserved hypothetical protein NMA2056 [imported] - Neisseria meningitidis (strain Z2491... gi\|15794934, gi\|... - gi\|7380684\|emb\|CAB85274.1\| conserved hypothetical protein [Neisseria meningitidis Z2491], gi\|2187688...	2.0E-54	[1..431]	[12..435]
gi\|19743668 - gi\|19743668\|gb\|AAL92573.1\| putative xanthine/uracil permease [Delftia acidovorans]	2.0E-54	[1..431]	[7..430]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNLSKHKTS IKTEIMAGII TFLTMAYIIV VNPVILGDAG VPFEQAFTAT IIAAVVGTLF  60
   61 MAIFTNLPIA IAPGMGLNAY FSYSVVKAHE GMTFAIAFSA VFVAGMILIL LSFTSFRTKL 120
  121 MEAIPENLKH AITAGIGLFI AFIGLRLTGI VTKNEANLVG LGDL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [165-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSAPVLLALA GLGITIVLMS LNVNGALFIG MLLTGIIAFF TGQLTFSNGV TSMPGLPEGI  60
   61 IVSNPITAVS DVINYGLYGV VFSFFLVTLF DTTGTLLGVA QQGGFMKDG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [274-433]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLPKAGRALL SDSFSATIGS MFGTTPSTAY IESSAGVAAG GRTGLTTVTV AVLFALAAFF  60
   61 GPLVSAVSGV SAITAPSLII VGSLMMGSVR HIDWDAFDEA FPAFLVILSM PLTSSIATGI 120
  121 ALGFISYPLM KVAKGKFRAV HPLVYVFGIL FAYQLIFLPH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits