YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29830580, gi\|...
Organism:	Streptomyces avermitilis MA-4680
Length:	279 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29830580, gi|....

Description	E-value	Query Range	Subject Range
gi\|55980997, gi\|... - gi\|55980997\|ref\|YP_144294.1\| thiosulfate sulfurtransferase [Thermus thermophilus HB8], gi\|55772410\|d... gi\|46196598, gi\|... - gi\|46198974\|ref\|YP_004641.1\| thiosulfate sulfurtransferase [Thermus thermophilus HB27], gi\|46196598\|...	227.0	[0..2]	[278..4]
gi\|48835999 - ref\|ZP_00292996.1\| COG2897: Rhodanese-related sulfurtransferase [Thermobifida fusca] gi\|72163118, gi\|... - gi\|72163118\|ref\|YP_290775.1\| thiosulfate sulfurtransferase [Thermobifida fusca YX], gi\|71916850\|gb\|A...	225.0	[0..1]	[279..1]
gi\|54022561, gi\|... - gi\|54022561\|ref\|YP_116803.1\| putative thiosulfate sulfurtransferase [Nocardia farcinica IFM 10152], ...	224.0	[0..1]	[277..1]
gi\|126437477, gi... - gi\|92906638\|ref\|ZP_01275418.1\| Thiosulfate sulfurtransferase [Mycobacterium sp. JLS], gi\|92434938\|gb... gi\|108801492, gi... - gi\|108801492\|ref\|YP_641689.1\| thiosulfate sulfurtransferase [Mycobacterium sp. MCS], gi\|108771911\|gb... gi\|92914329, gi\|... - gi\|92914329\|ref\|ZP_01282956.1\| Thiosulfate sulfurtransferase [Mycobacterium sp. KMS], gi\|92441446\|gb...	223.0	[0..1]	[276..1]
gi\|90204837, gi\|... - gi\|90204837\|ref\|ZP_01207479.1\| Thiosulfate sulfurtransferase [Mycobacterium vanbaalenii PYR-1], gi\|9...	221.0	[0..1]	[276..1]
gi\|89319406, gi\|... - gi\|89340733\|ref\|ZP_01192990.1\| Rhodanese-like [Mycobacterium flavescens PYR-GCK], gi\|89319406\|gb\|EAS...	221.0	[0..1]	[276..1]
gi\|55670303 - gi\|55670303\|pdb\|1UAR\|A Chain A, Crystal Structure Of Rhodanese From Thermus Thermophilus Hb8	218.0	[0..2]	[278..4]
gi\|24427857, gi\|... - gi\|32141228\|ref\|NP_733629.1\| thiosulfate sulfurtransferase [Streptomyces coelicolor A3(2)], gi\|24427...	218.0	[0..1]	[279..1]
gi\|222450857, gi... - gi\|222526978\|ref\|YP_002571449.1\| Rhodanese domain protein [Chloroflexus sp. Y-400-fl], gi\|222450857\|... gi\|53796683 - ref\|ZP_00357619.1\| COG2897: Rhodanese-related sulfurtransferase [Chloroflexus aurantiacus] gi\|76258728, gi\|... - gi\|76258728\|ref\|ZP_00766382.1\| Rhodanese-like [Chloroflexus aurantiacus J-10-fl], gi\|76166457\|gb\|EAO...	216.0	[0..2]	[275..5]
gi\|133916152, gi... - gi\|134103529\|ref\|YP_001109190.1\| thiosulfate sulfurtransferase [Saccharopolyspora erythraea NRRL 233... THTR_SACER - Putative thiosulfate sulfurtransferase OS=Saccharopolyspora erythraea GN=cysA PE=1 SV=1	216.0	[0..1]	[279..1]

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Predicted Domain #1

Region A:
Residues: [1-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRSDVLVDA DWVQDHLDDP SVAIVEVDED TSAYEKNHIR NAIRIDWTKD LQDPVRRDFI  60
   61 DQEGFEKLLS EKGIANDTLV VLYGGNNNWF ASYAYWYFKL YGHENVKLLD GGRKKWELDS 120
  121 RDLVAEVPTR ATTDYKAKAQ NTAIRAFRDD VVAAIGSQNL VDVRSPDEFS GKLLAPAHLP 180
  181 QEQSQRPGHI PSARNIPWSK NANDDGTFKS DDELKELYVE EQVDLAKDTI AYCRIGERSA 240
  241 LTWFVLHELL GVENVKNYDG SWTEYGSLVG VPIELGANK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.69897
Match:	1uarA
Description:	Crystal structure of Rhodanese from Thermus thermophilus HB8
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
thiosulfate sulfurtransferase activity	4.07143118207301	bayes_pls_golite062009
sulfurtransferase activity	2.90539767285523	bayes_pls_golite062009
transferase activity, transferring sulfur-containing groups	2.27106357502695	bayes_pls_golite062009
binding	0.707400650337243	bayes_pls_golite062009
catalytic activity	0.687308230067573	bayes_pls_golite062009
phosphoprotein phosphatase activity	0.604322283158386	bayes_pls_golite062009
protein tyrosine phosphatase activity	0.478774591903257	bayes_pls_golite062009
transferase activity	0.302497611306574	bayes_pls_golite062009
protein binding	0.26324773851743	bayes_pls_golite062009
phosphatase activity	0.0565207759893606	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: