YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29831280, gi\|...
Organism:	Streptomyces avermitilis MA-4680
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29831280, gi|....

Description	E-value	Query Range	Subject Range
gi\|82703204, gi\|... - gi\|82703204\|ref\|YP_412770.1\| thioredoxin [Nitrosospira multiformis ATCC 25196], gi\|82411269\|gb\|ABB75...	118.0	[0..1]	[98..1]
gi\|45520598, gi\|... - gi\|91776641\|ref\|YP_546397.1\| thioredoxin [Methylobacillus flagellatus KT], gi\|91710628\|gb\|ABE50556.1...	117.0	[0..1]	[95..1]
gi\|58001509, gi\|... - gi\|58039095\|ref\|YP_191059.1\| thioredoxin [Gluconobacter oxydans 621H], gi\|58001509\|gb\|AAW60403.1\| Th...	117.0	[0..17]	[98..20]
gi\|41723889, gi\|... - gi\|71908610\|ref\|YP_286197.1\| thioredoxin [Dechloromonas aromatica RCB], gi\|71848231\|gb\|AAZ47727.1\| T...	116.0	[0..7]	[98..8]
gi\|2541892 - gi\|2541892\|dbj\|BAA22827.1\| thioredoxin m [Cyanidium caldarium]	116.0	[0..4]	[98..3]
gi\|186468091, gi... - gi\|23128834\|ref\|ZP_00110673.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Nostoc punctifor...	116.0	[0..1]	[98..1]
gi\|110648434, gi... - gi\|110835323\|ref\|YP_694182.1\| thioredoxin [Alcanivorax borkumensis SK2], gi\|110648434\|emb\|CAL17910.1...	115.0	[0..17]	[98..20]
gi\|33566268 - gi\|33566268\|emb\|CAE37179.1\| thioredoxin 1 [Bordetella parapertussis] gi\|33596499 - gi\|33596499\|ref\|NP_884142.1\| thioredoxin 1 [Bordetella parapertussis 12822] gi\|33592390, gi\|... - gi\|33592390\|ref\|NP_880034.1\| thioredoxin 1 [Bordetella pertussis Tohama I], gi\|33572035\|emb\|CAE41559...	115.0	[0..17]	[98..53]
gi\|25282775 - pir\|\|AD1813 thioredoxin [imported] - Nostoc sp. (strain PCC 7120) gi\|75702591, gi\|... - gi\|75908866\|ref\|YP_323162.1\| thioredoxin [Anabaena variabilis ATCC 29413], gi\|75702591\|gb\|ABA22267.1... gi\|7427614, gi\|1... - gi\|7427614\|pir\|\|TXAI thioredoxin 1 - Anabaena sp, gi\|142118\|gb\|AAA22049.1\| thioredoxin THIO1_NOSSO - Thioredoxin-1 OS=Nostoc sp. (strain ATCC 29151 / PCC 7119) GN=trxA PE=1 SV=2 THIO1_NOSS1 - Thioredoxin-1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trxA PE=3 SV=2	115.0	[0..1]	[98..1]
gi\|33576644, gi\|... - gi\|33602206\|ref\|NP_889766.1\| thioredoxin 1 [Bordetella bronchiseptica RB50], gi\|33576644\|emb\|CAE3372...	114.0	[0..17]	[98..53]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADMSPIFRR KAAQSAPQDR LVTLIRKPGC HLCDDAQQVI EKVCGDLGVP WEQKDITQDA  60
   61 ELHREYWEQI PVVLVDGAQH TFWRVNEERL RKALTQGLPG RS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.522879
Match:	2cvkA
Description:	Crystal Structure of Thermus thermophilus Thioredoxin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits