YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29609139, gi\|...
Organism:	Streptomyces avermitilis MA-4680
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29609139, gi|....

Description	E-value	Query Range	Subject Range
gi\|6714685, gi\|2... - gi\|6714685\|emb\|CAB66257.1\| putative nicotinate-nucleotide adenylyltransferase [Streptomyces coelicol...	229.0	[0..1]	[224..1]
gi\|71916302, gi\|... - gi\|72162570\|ref\|YP_290227.1\| nicotinic acid mononucleotide adenylyltransferase [Thermobifida fusca Y...	212.0	[0..8]	[224..2]
gi\|21325123, gi\|... - gi\|62391195\|ref\|YP_226597.1\| nicotinic acid mononucleotide adenylyltransferase [Corynebacterium glut...	211.0	[0..22]	[224..7]
gi\|224287172, gi... - gi\|239622200\|ref\|ZP_04665231.1\| nicotinic acid mononucleotide adenyltransferase [Bifidobacterium lon... gi\|189439645, gi... - gi\|189439645\|ref\|YP_001954726.1\| nicotinic acid mononucleotide adenylyltransferase [Bifidobacterium ... gi\|227546197, gi... - gi\|227546197\|ref\|ZP_03976246.1\| nicotinic acid mononucleotide adenylyltransferase [Bifidobacterium l... gi\|23465598, gi\|... - gi\|23465598\|ref\|NP_696201.1\| nicotinic acid mononucleotide adenylyltransferase [Bifidobacterium long...	211.0	[0..8]	[224..44]
NADD_STRCO - Probable nicotinate-nucleotide adenylyltransferase OS=Streptomyces coelicolor GN=nadD PE=3 SV=2 NADD_STRCO - Probable nicotinate-nucleotide adenylyltransferase OS=Streptomyces coelicolor (strain ATCC BAA-471 /...	209.0	[0..37]	[224..1]
gi\|46191084 - gi\|46191084\|ref\|ZP_00206668.1\| COG1057: Nicotinic acid mononucleotide adenylyltransferase [Bifidobac...	209.0	[0..8]	[224..25]
NADD_COREF - Probable nicotinate-nucleotide adenylyltransferase OS=Corynebacterium efficiens (strain DSM 44549 / ... NADD_COREF - Probable nicotinate-nucleotide adenylyltransferase OS=Corynebacterium efficiens GN=nadD PE=3 SV=2	208.0	[0..26]	[223..4]
gi\|25028813, gi\|... - gi\|25028813\|ref\|NP_738867.1\| nicotinic acid mononucleotide adenylyltransferase [Corynebacterium effi...	207.0	[0..5]	[223..3]
gi\|110817837, gi... - gi\|111018307\|ref\|YP_701279.1\| nicotinic acid mononucleotide adenylyltransferase [Rhodococcus jostii ...	207.0	[0..28]	[222..7]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEQDMPTGP ASGTVHGARR GPGNGPSNPG KRRLGVMGGT FDPIHHGHLV AASEVAAQFH  60
   61 LDEVVFVPTG QPWQKTDRKV TPAEDRYLMT VIATAENPQF SVSRIDIDRG GPTYTTDTLR 120
  121 DLSALNPDTD IFFITGADAL GQILTWRYTE ELFSLAHFIG VTRPGHTLAD PGLPEGGVSL 180
  181 VEVPALAISS TDCRARVANG APVWYLVPDG VVRYIDKREL YRGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.154902
Match:	1kamA
Description:	Nicotinamide mononucleotide (NMN) adenylyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nicotinate-nucleotide adenylyltransferase activity	2.83520682135534	bayes_pls_golite062009
nicotinamide-nucleotide adenylyltransferase activity	2.57110502211876	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	2.54008423253828	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	2.54008423253828	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	2.52910114154477	bayes_pls_golite062009
catalytic activity	2.37674226834122	bayes_pls_golite062009
ligase activity	1.92894388839884	bayes_pls_golite062009
adenylyltransferase activity	1.08055019963499	bayes_pls_golite062009
pantetheine-phosphate adenylyltransferase activity	0.454904507512502	bayes_pls_golite062009
pantoate-beta-alanine ligase activity	0.282286652169846	bayes_pls_golite062009
nucleotidyltransferase activity	0.2293846471193	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: