YRC Public Data Repository - Protein Structure Prediction

Protein:	TATB_VIBVY
Organism:	Vibrio vulnificus YJ016
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TATB_VIBVY.

Description	E-value	Query Range	Subject Range
gi\|46911761, gi\|... - gi\|54307341\|ref\|YP_128361.1\| sec-independent translocase [Photobacterium profundum SS9], gi\|46911761...	119.0	[0..1]	[112..1]
gi\|89049722, gi\|... - gi\|89074434\|ref\|ZP_01160911.1\| sec-independent translocase [Photobacterium sp. SKA34], gi\|89049722\|g... gi\|90581031, gi\|... - gi\|90581031\|ref\|ZP_01236831.1\| sec-independent translocase [Vibrio angustum S14], gi\|90437727\|gb\|EAS...	117.0	[0..1]	[112..1]
gi\|90412762, gi\|... - gi\|90412762\|ref\|ZP_01220763.1\| sec-independent translocase [Photobacterium profundum 3TCK], gi\|90326...	116.0	[0..1]	[97..1]
gi\|76591416, gi\|... - gi\|76793314\|ref\|ZP_00775803.1\| Twin-arginine translocation protein TatB [Pseudoalteromonas atlantica...	114.0	[0..1]	[99..1]
gi\|90407552, gi\|... - gi\|90407552\|ref\|ZP_01215734.1\| sec-independent translocase [Psychromonas sp. CNPT3], gi\|90311362\|gb\|...	114.0	[0..1]	[126..1]
TATB_PSYIN - Sec-independent protein translocase protein TatB OS=Psychromonas ingrahamii (strain 37) GN=tatB PE=3...	113.0	[0..1]	[129..1]
gi\|116220886, gi... - gi\|75820020\|ref\|ZP_00750078.1\| COG1826: Sec-independent protein secretion pathway components [Vibrio... gi\|153826632, gi... - gi\|153826632\|ref\|ZP_01979299.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149739570...	113.0	[0..1]	[130..1]
gi\|91190181, gi\|... - gi\|91224935\|ref\|ZP_01260194.1\| sec-independent translocase [Vibrio alginolyticus 12G01], gi\|91190181...	112.0	[0..1]	[130..1]
gi\|68515893, gi\|... - gi\|68546479\|ref\|ZP_00586026.1\| Twin-arginine translocation protein TatB [Shewanella amazonensis SB2B...	112.0	[0..1]	[123..1]
TATB_HAEDU - Sec-independent protein translocase protein tatB homolog OS=Haemophilus ducreyi GN=tatB PE=3 SV=1 TATB_HAEDU - Sec-independent protein translocase protein TatB OS=Haemophilus ducreyi (strain 35000HP / ATCC 70072...	112.0	[0..1]	[130..1]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDIGFWELV LIFVVGLVVL GPERLPHAIR SVARFVSAAK SMANSVKDEL AHELKVQELQ  60
   61 ENLRKAEQMG MEELSPDLKA SVEQLKQAAQ SVNRPYADVS AKNEATSSSS SDATHQTEAT 120
  121 KTSAANTKSE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits