YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15901897, gi\|...
Organism:	Streptococcus pneumoniae TIGR4
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15901897, gi|....

Description	E-value	Query Range	Subject Range
gi\|39995284, gi\|... - gi\|39995284\|ref\|NP_951235.1\| hypothetical protein GSU0173 [Geobacter sulfurreducens PCA], gi\|3998204...	232.0	[0..1]	[152..14]
gi\|7470017 - pir\|\|S74709 hypothetical protein sll1188 - Synechocystis sp. (strain PCC 6803) gi\|16329452, gi\|... - gi\|1651934\|dbj\|BAA16860.1\| sll1188 [Synechocystis sp. PCC 6803], gi\|16329452\|ref\|NP_440180.1\| hypoth...	229.0	[0..2]	[152..9]
gi\|56687164, gi\|... - gi\|56752205\|ref\|YP_172906.1\| hypothetical protein syc2196_d [Synechococcus elongatus PCC 6301], gi\|5...	226.0	[0..2]	[151..23]
gi\|81300708, gi\|... - gi\|81300708\|ref\|YP_400916.1\| hypothetical protein Synpcc7942_1899 [Synechococcus elongatus PCC 7942]...	224.0	[0..2]	[151..11]
gi\|18310898, gi\|... - gi\|18310898\|ref\|NP_562832.1\| hypothetical protein CPE1916 [Clostridium perfringens str. 13], gi\|1814...	221.0	[0..2]	[152..9]
gi\|46132274, gi\|... - gi\|73540978\|ref\|YP_295498.1\| hypothetical protein Reut_A1284 [Ralstonia eutropha JMP134], gi\|7211839...	220.0	[0..1]	[152..10]
gi\|33567837, gi\|... - gi\|33600239\|ref\|NP_887799.1\| hypothetical protein BB1253 [Bordetella bronchiseptica RB50], gi\|335678...	219.0	[0..1]	[152..8]
gi\|94313639, gi\|... - gi\|94313639\|ref\|YP_586848.1\| hypothetical protein Rmet_4717 [Ralstonia metallidurans CH34], gi\|93357...	219.0	[0..1]	[152..32]
gi\|229306740, gi... - gi\|229548054\|ref\|ZP_04436779.1\| protein of hypothetical function DUF985 [Enterococcus faecalis ATCC ... gi\|238857146, gi... - gi\|238857146\|ref\|ZP_04647397.1\| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11], g... gi\|227176353, gi... - gi\|227554514\|ref\|ZP_03984561.1\| protein of hypothetical function DUF985 [Enterococcus faecalis HH22]... gi\|229547479, gi... - gi\|229547479\|ref\|ZP_04436204.1\| protein of hypothetical function DUF985 [Enterococcus faecalis TX133... gi\|29345017, gi\|... - gi\|29377550\|ref\|NP_816704.1\| hypothetical protein EF3093 [Enterococcus faecalis V583], gi\|29345017\|g...	219.0	[0..2]	[151..7]
gi\|82743552, gi\|... - gi\|82743552\|ref\|ZP_00906192.1\| conserved hypothetical protein [Shewanella sp. W3-18-1], gi\|82719093\|...	219.0	[0..2]	[152..8]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRTLELAPH IEGGYFRQTK KASDTINLAG KGRALYTSIY FLLEETNPSH FHRLTADEIW  60
   61 YFHAGSPLTV HMITADGHYE AVTLGLDISK GQQLHYCVPK GTIWGSTVDK DDALVSCLVA 120
  121 PGFEFEDFEL FERVDLLATY PEHKEMIERL TRY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.221849
Match:	1yudA
Description:	Crystal structure of hypothetical protein SO0799 from Shewanella oneidensis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits