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View Structure Prediction Details

Protein: gi|16124874, gi|...
Organism: Caulobacter crescentus CB15
Length: 450 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16124874, gi|....

Description E-value Query
Range
Subject
Range
gi|88949005, gi|... - gi|88949005|ref|ZP_01151623.1| restriction endonuclease S subunit [Halorhodospira halophila SL1], gi...
286.0 [0..1] [449..1]

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Predicted Domain #1
Region A:
Residues: [1-450]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFPAYESYK ESGVEWLGRV PSHWNFRPLK HLVIMRSGGT PSKEREDYWG GEIPWASAKD  60
   61 LKVDTLTDTQ DHLTAEALDE GAAQLLPANA VVVLVRGMML ARTFPVCRLS RPMTINQDLK 120
  121 GLIANRGVDP NYLAWSLRAS EVETLCRLDE AGHGTKALRM DAWSTMELPA PSLAEQQAIA 180
  181 AFLDRETAKI DALVEAQERL IALLKEKRQA VISHAVTKGL DPSAQMKDSG VEWLGQMPAH 240
  241 WEVVPAKNLA DSIKAGPFGS ALTKDMYSSA GYRVYGQEQV IPGDFRIGDY YVTSDRYNEL 300
  301 SQYRVEVGDL LVSCVGTFGK IAIFPQGAEP GIINPRLIRF RPNNQVDPTY LCVLLRSAVS 360
  361 FEQFSYLSRG GTMDVINIGI LGEIVVPVPP MQEQISIAGY LAEVQEQFDS LSAASEAAIT 420
  421 LLQERRAALI SAAVTGKIDV RGLVQTAEAA 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 61.69897
Match: 1yf2A
Description: Three-dimensional structure of DNA sequence specificity (S) subunit of a type I restriction-modification enzyme and its functional implications
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.283264914073702 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle