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View Structure Prediction Details

Protein: gi|25399373
Organism: Caulobacter vibrioides
Length: 318 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25399373.

Description E-value Query
Range
Subject
Range
gi|89359528, gi|... - gi|89359528|ref|ZP_01197349.1| similar to ABC-type spermidine/putrescine transport system permease c...
172.0 [0..15] [304..271]

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Predicted Domain #1
Region A:
Residues: [1-83]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAPLDPARW SDANGFDLGP GIRRGNRMGG GVLMAKKSAP GPLEYLRRWQ MQAWLAAVFI  60
   61 FLYAPLIALM AFSFNDSKRN IVW

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [84-318]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGFTLKYYEK LFNNSELLEA FGNSLTIAAA STVISLFLGA AVALALWRFR FPGKTAVDGA  60
   61 MALPIVVPEI CMGVAMLVFF AKVLPWPQGM PWPLNLGAII IAHVSFSFPF VAVVVRARMA 120
  121 SFNREMEEAA RDLGAGEFRT IKDVILPHMA PSLIAGALLA FTLSLDDFVI TFFTAGPDTV 180
  181 TFPVKVYSMV RFSVTPEVNA ASTVLIVLTV LLTAAALKLQ GNPAAAAGHG AKDGK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.0
Match: 2onkC
Description: No description for 2onkC was found.

Predicted functions:

Term Confidence Notes
transporter activity 4.47791794099048 bayes_pls_golite062009
transmembrane transporter activity 4.39634414867723 bayes_pls_golite062009
active transmembrane transporter activity 3.89128503869358 bayes_pls_golite062009
primary active transmembrane transporter activity 3.78071702105421 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 3.78024819585319 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 3.76710689838502 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 3.76710689838502 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 3.76480875126102 bayes_pls_golite062009
substrate-specific transporter activity 3.65928254714629 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 3.61840729006809 bayes_pls_golite062009
ATPase activity, coupled 3.13976951511862 bayes_pls_golite062009
ATPase activity 2.90304684848114 bayes_pls_golite062009
nucleoside-triphosphatase activity 2.85886572725081 bayes_pls_golite062009
pyrophosphatase activity 2.78799656158331 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 2.76854894183109 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 2.76635806953632 bayes_pls_golite062009
ion transmembrane transporter activity 2.42886654788147 bayes_pls_golite062009
cation transmembrane transporter activity 1.54974155411368 bayes_pls_golite062009
hydrolase activity 1.52360037846731 bayes_pls_golite062009
amine transmembrane transporter activity 1.35745015743741 bayes_pls_golite062009
secondary active transmembrane transporter activity 0.96228415837358 bayes_pls_golite062009
organic acid transmembrane transporter activity 0.86220210518613 bayes_pls_golite062009
carboxylic acid transmembrane transporter activity 0.851725653994868 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions 0.69074662322395 bayes_pls_golite062009
solute:cation symporter activity 0.483541714040201 bayes_pls_golite062009
symporter activity 0.483541714040201 bayes_pls_golite062009
catalytic activity 0.427775057748038 bayes_pls_golite062009
anion transmembrane transporter activity 0.18066368771781 bayes_pls_golite062009
sugar transmembrane transporter activity 0.149318428666465 bayes_pls_golite062009
carbohydrate transmembrane transporter activity 0.0202682073710961 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle