YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7446759
Organism:	Synechocystis sp.
Length:	345 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7446759.

Description	E-value	Query Range	Subject Range
gi\|28900071, gi\|... - gi\|28900071\|ref\|NP_799726.1\| putative transcription regulator protein [Vibrio parahaemolyticus RIMD ... gi\|28808354 - gi\|28808354\|dbj\|BAC61559.1\| putative transcription regulator protein [Vibrio parahaemolyticus RIMD 2...	265.0	[0..8]	[309..4]
gi\|91191158, gi\|... - gi\|91224247\|ref\|ZP_01259510.1\| putative transcription regulator protein [Vibrio alginolyticus 12G01]...	265.0	[0..8]	[309..4]
gi\|116185384, gi... - gi\|75856032\|ref\|ZP_00763668.1\| COG0583: Transcriptional regulator [Vibrio sp. Ex25], gi\|254227935\|re...	264.0	[0..8]	[309..4]
gi\|27367995, gi\|... - gi\|27367995\|ref\|NP_763522.1\| transcriptional regulator [Vibrio vulnificus CMCP6], gi\|27359568\|gb\|AAO...	261.0	[0..4]	[314..1]
gi\|117614564, gi... - gi\|78685922\|ref\|ZP_00850696.1\| transcriptional regulator, LysR family [Shewanella sp. ANA-3], gi\|785...	261.0	[0..8]	[306..4]
gi\|37200667, gi\|... - gi\|37676126\|ref\|NP_936522.1\| transcriptional regulator [Vibrio vulnificus YJ016], gi\|37200667\|dbj\|BA...	261.0	[0..4]	[314..1]
gi\|114045851, gi... - gi\|78689367\|ref\|ZP_00854030.1\| transcriptional regulator, LysR family [Shewanella sp. MR-7], gi\|7851...	260.0	[0..8]	[306..4]
SO0369 - transcriptional regulator LysR family gi\|24345816, gi\|... - gi\|24371967\|ref\|NP_716009.1\| LysR family transcriptional regulator [Shewanella oneidensis MR-1], gi\|...	260.0	[0..8]	[307..4]
gi\|82406257, gi\|... - gi\|82495665\|ref\|ZP_00881239.1\| transcriptional regulator, LysR family [Shewanella sp. MR-4], gi\|8240...	257.0	[0..8]	[305..4]
gi\|87118407, gi\|... - gi\|87118407\|ref\|ZP_01074306.1\| putative transcription regulator protein [Marinomonas sp. MED121], gi...	254.0	[0..7]	[309..3]

Back

Predicted Domain #1

Region A:
Residues: [1-345]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDIPFTLDQ LRILKAIASE GSFKRAADTL YVSQPAVSLQ VQNLEKQLSV PLFDRGGRKA  60
   61 QLTEAGHLLL NYGEKIITLC QETCRAIEDL QNLQGGTLIV GASQTTGTYL LPRMIGMFRQ 120
  121 QYPDVTVQLQ VHSTRRTAWG VANGQVDLAI IGGEVPAELQ ETLTVLPYAE DELALILPVL 180
  181 HPLAQAETIQ KEDLYKLKFI SLDSQSTIRK VIDKVLSQGE IDTKRLKIEM ELNSIEAIKN 240
  241 AVQSGLGAAF VSTTAIEKEL EMNVLHIAPI KNVEIRRVLS VIINPNRYRS KASAAFIREV 300
  301 LPQFSTHPDA LDPERLFANP YSSNNGDRQG DGKDGKGSIE IDSVT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.045757
Match:	2h99A
Description:	No description for 2h99A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits