YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1652467, gi\|1...
Organism:	Synechocystis sp. PCC 6803
Length:	65 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1652467, gi|1....

Description	E-value	Query Range	Subject Range
PGR5_ARATH - Protein PROTON GRADIENT REGULATION 5, chloroplastic OS=Arabidopsis thaliana GN=PGR5 PE=1 SV=1	114.0	[0..1]	[65..69]
gi\|67968361, gi\|... - gi\|67968361\|dbj\|BAE00074.1\| PGR5 [Zea mays], gi\|162461380\|ref\|NP_001105792.1\| pgr5 protein [Zea mays...	113.0	[0..1]	[65..63]
gi\|67968357 - gi\|67968357\|dbj\|BAE00072.1\| PGR5 [Amaranthus hybridus]	111.0	[0..1]	[65..61]
gi\|5902602 - gi\|5902602\|gb\|AAD55571.1\|AF110789_1 unknown [Volvox carteri f. nagariensis]	109.0	[0..2]	[65..81]
gi\|48093522 - gi\|48093522\|gb\|AAT40138.1\| unknown [Bassia scoparia]	107.0	[0..1]	[65..17]
gi\|67968359 - gi\|67968359\|dbj\|BAE00073.1\| PGR5 [Portulaca oleracea]	107.0	[0..1]	[65..59]
gi\|67968363 - gi\|67968363\|dbj\|BAE00075.1\| PGR5 [Portulaca grandiflora]	106.0	[0..1]	[65..59]
gi\|51965122, gi\|... - gi\|51965122\|ref\|XP_507345.1\| PREDICTED OSJNBa0044E16.27 gene product [Oryza sativa (japonica cultiva... gi\|125562613 - gi\|125562613\|gb\|EAZ08061.1\| hypothetical protein OsI_30326 [Oryza sativa Indica Group]	105.0	[0..1]	[65..61]
gi\|47026897 - gi\|47026897\|gb\|AAT08671.1\| unknown [Hyacinthus orientalis]	101.0	[0..1]	[65..15]

Back

Predicted Domain #1

Region A:
Residues: [1-65]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAPIVILVR QQLGKAKFNQ IRGKAIALHC QTITNFCNRV GIDAKQRQNL IRLAKSNGKT  60
   61 LGLLA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits