| Protein: | gi|1652866, gi|1... |
| Organism: | Synechocystis sp. PCC 6803 |
| Length: | 649 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1652866, gi|1....
| Description | E-value | Query Range |
Subject Range |
|
|
419.0 | [0..1] | [648..1] |
|
|
417.0 | [0..1] | [648..1] |
|
|
373.0 | [0..22] | [648..1] |
|
|
332.0 | [0..4] | [647..24] |
|
|
323.0 | [0..6] | [647..28] |
|
|
293.0 | [0..148] | [646..119] |
|
Region A: Residues: [1-153] |
1 11 21 31 41 51
| | | | | |
1 MSRLPGFALT FLSVLLTSLP AMAGQLVNWN FNASQNRLTF YTDSRVQPTA QLIPNPTRIV 60
61 VDLPGTTLRG PTVRQAGGGR VREIRIGEPD SFTTRVVIEL DAGYTVDPQQ VKVRGITPTQ 120
121 WVVELPTPEL APASNNNAPG PNPDGSSLPT QNL
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.299 | N/A | N/A | d.189.1 | PX domain |
| View | Download | 0.212 | N/A | N/A | b.1.1 | Immunoglobulin |
| View | Download | 0.210 | N/A | N/A | d.15.6 | Superantigen toxins, C-terminal domain |
|
Region A: Residues: [154-295] |
1 11 21 31 41 51
| | | | | |
1 SAANPPSTGQ QYLQVTGNGL FVRLDKNGDN SGIRIQPNAR QSTVNFELNG AVLPESLVGQ 60
61 SLPVGQYGVE EIKFSDNPNN PRLSLALADS GGGWNAYYSR VGGGVVLLPK QISRSGGANP 120
121 APGSAAVPVS NNTSNSSPSS SG
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.382 | b.60.1 | Lipocalins |
| View | Download | 0.248 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.267 | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.311 | b.60.1 | Lipocalins |
| View | Download | 0.309 | b.60.1 | Lipocalins |
|
Region A: Residues: [296-469] |
1 11 21 31 41 51
| | | | | |
1 NRSPNDRLVS QASNRNLANI TAIEVTRDDS QLIIRGDRQI NARGNFNRLT GNYEIRLDRA 60
61 QLSPQFQSPE LATGGPLYQL NISQETNDSV LILVRPNTGR RFGRLFRSGG SLYALELISD 120
121 TTASRPTGNL PANNPPRGNS GDQISIAVQP PPANATPSFP PEWSNPPAGN LPSV
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [470-649] |
1 11 21 31 41 51
| | | | | |
1 PRGGRLVVVD PGHGGKDPGA IGIRGVQEKD VVLAVSQYLQ RYLEQQGVRV LMTRTGDYFI 60
61 SLQGRTDMAN RAGADLFVSI HANSMGMGRP DVNGFEIYYH GNAGLSQAIH RNVVNSLNVR 120
121 DRRVRQARFY VLRNSRMPST LVEMGFVTGN EDNYKLTDPN FQQQMAQAIA RGVLEYLQQR 180
181
|
| Detection Method: | |
| Confidence: | 45.0 |
| Match: | 1jwqA |
| Description: | Structure of the catalytic domain of CwlV, N-acetylmuramoyl-L-alanine amidase from Bacillus(Paenibacillus) polymyxa var.colistinus |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| hydrolase activity | 2.55496790078447 | bayes_pls_golite062009 |
| peptidase activity | 0.517144194937187 | bayes_pls_golite062009 |
| catalytic activity | 0.498429525161841 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 0.339160230581552 | bayes_pls_golite062009 |
