YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7469413
Organism:	Synechocystis sp.
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7469413.

Description	E-value	Query Range	Subject Range
gi\|71669218, gi\|... - gi\|71677587\|ref\|ZP_00675323.1\| Protein of unknown function DUF156 [Trichodesmium erythraeum IMS101],...	137.0	[0..52]	[167..6]
gi\|186680637, gi... - gi\|23130185\|ref\|ZP_00112004.1\| COG1937: Uncharacterized protein conserved in bacteria [Nostoc puncti...	134.0	[0..54]	[167..14]
gi\|17131849, gi\|... - gi\|17230248\|ref\|NP_486796.1\| hypothetical protein all2756 [Nostoc sp. PCC 7120], gi\|17131849\|dbj\|BAB... gi\|25532323 - pir\|\|AE2150 hypothetical protein all2756 [imported] - Nostoc sp. (strain PCC 7120)	133.0	[0..54]	[167..14]
gi\|75704244, gi\|... - gi\|75910519\|ref\|YP_324815.1\| hypothetical protein Ava_4322 [Anabaena variabilis ATCC 29413], gi\|7570...	132.0	[0..54]	[167..14]
gi\|86606913 - gi\|86606913\|ref\|YP_475676.1\| hypothetical protein CYA_2277 [Cyanobacteria bacterium Yellowstone A-Pr... gi\|86555455, gi\|... - gi\|86606913\|ref\|YP_475676.1\| hypothetical protein CYA_2277 [Synechococcus sp. JA-3-3Ab], gi\|86555455...	127.0	[0..76]	[167..73]
gi\|86556487, gi\|... - gi\|86607945\|ref\|YP_476707.1\| hypothetical protein CYB_0450 [Synechococcus sp. JA-2-3B'a(2-13)], gi\|8... gi\|86607945 - gi\|86607945\|ref\|YP_476707.1\| hypothetical protein CYB_0450 [Cyanobacteria bacterium Yellowstone B-Pr...	122.0	[0..76]	[167..39]
gi\|228670001, gi... - gi\|229113483\|ref\|ZP_04242933.1\| DNA mismatch repair protein, C-terminal domain protein [Bacillus cer... gi\|116585166, gi... - gi\|190015485\|ref\|YP_001967096.1\| hypothetical protein pPER272_0232 [Bacillus cereus], gi\|190015220\|r... gi\|218848376, gi... - gi\|218848376\|ref\|YP_002455161.1\| YvgZ [Bacillus cereus AH820], gi\|218540427\|gb\|ACK92823.1\| YvgZ [Bac... gi\|44004522, gi\|... - gi\|44004522\|ref\|NP_982190.1\| hypothetical protein BCE_A0183 [Bacillus cereus ATCC 10987], gi\|4274158...	122.0	[0..80]	[166..15]
gi\|52005069, gi\|... - gi\|52787245\|ref\|YP_093074.1\| YvgZ [Bacillus licheniformis ATCC 14580], gi\|52349747\|gb\|AAU42381.1\| Yv...	122.0	[0..72]	[166..4]
gi\|221324829 - gi\|221324829\|ref\|ZP_03606123.1\| hypothetical protein BsubsS_18231 [Bacillus subtilis subsp. subtilis... CSOR_BACSU - Copper-sensing transcriptional repressor CsoR OS=Bacillus subtilis GN=csoR PE=1 SV=1 gi\|221315629 - gi\|221315629\|ref\|ZP_03597434.1\| hypothetical protein BsubsN3_18112 [Bacillus subtilis subsp. subtili... gi\|221320545 - gi\|221320545\|ref\|ZP_03601839.1\| hypothetical protein BsubsJ_18080 [Bacillus subtilis subsp. subtilis... CSOR_BACSU - Copper-sensing transcriptional repressor CsoR OS=Bacillus subtilis (strain 168) GN=csoR PE=1 SV=1	121.0	[0..70]	[166..2]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAMCGFGLV HTKTTISYWA KGVLPKISHQ RRKILPPANI KKNCLIGQWF YRQISTNIER  60
   61 MTSQPVPHPS ARHSHAHPHV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [81-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSQESLQKLV NRLSRIEGHI RGVKTMVQEN RPCPEVLIQV AAVRGALDRV ARLILDDHMN  60
   61 ECITRAAAEG NIEQELAELK EALDRFL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.09691
Match:	2hh7A
Description:	No description for 2hh7A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits