YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33575814, gi\|...
Organism:	Bordetella bronchiseptica RB50
Length:	174 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33575814, gi|....

Description	E-value	Query Range	Subject Range
gi\|33572995 - gi\|33572995\|emb\|CAE36634.1\| putative exported protein [Bordetella parapertussis] gi\|33595992 - gi\|33595992\|ref\|NP_883635.1\| hypothetical protein BPP1332 [Bordetella parapertussis 12822]	191.0	[0..1]	[174..1]
gi\|33593157, gi\|... - gi\|33593157\|ref\|NP_880801.1\| hypothetical protein BP2147 [Bordetella pertussis Tohama I], gi\|3356353...	154.0	[0..16]	[174..1]
gi\|52628356, gi\|... - gi\|52841245\|ref\|YP_095044.1\| hypothetical protein lpg1011 [Legionella pneumophila subsp. pneumophila... gi\|19881007 - gi\|19881007\|gb\|AAM00634.1\| unknown [Legionella pneumophila]	140.0	[0..45]	[171..5]
gi\|19918035, gi\|... - gi\|20092743\|ref\|NP_618818.1\| hypothetical protein MA3947 [Methanosarcina acetivorans C2A], gi\|199180...	140.0	[0..25]	[170..9]
gi\|54298310, gi\|... - gi\|54298310\|ref\|YP_124679.1\| hypothetical protein lpp2368 [Legionella pneumophila str. Paris], gi\|53...	140.0	[0..45]	[171..5]
gi\|32033869 - gi\|32033869\|ref\|ZP_00134140.1\| COG3439: Uncharacterized conserved protein [Actinobacillus pleuropneu... gi\|126208618, gi... - gi\|126208618\|ref\|YP_001053843.1\| putative periplasmic protein [Actinobacillus pleuropneumoniae L20],...	139.0	[0..24]	[170..2]
gi\|11280553 - pir\|\|H81946 probable periplasmic protein NMA0993 [imported] - Neisseria meningitidis (strain Z2491 s... gi\|15793950, gi\|... - gi\|7379696\|emb\|CAB84263.1\| putative periplasmic protein [Neisseria meningitidis Z2491], gi\|218767902...	136.0	[0..25]	[170..5]
gi\|16767749, gi\|... - gi\|16767749\|ref\|NP_463364.1\| hypothetical protein STM4505 [Salmonella typhimurium LT2], gi\|16423071\|... lcl\|NC_016856.1_... - [gene=STM14_5408] [protein=hypothetical protein] [protein_id=YP_005240835.1] [location=4772403..4772...	136.0	[0..24]	[168..9]
gi\|254668203, gi... - gi\|254804661\|ref\|YP_003082882.1\| hypothetical protein NMO_0671 [Neisseria meningitidis], gi\|25466820... gi\|11280554 - pir\|\|D81158 conserved hypothetical protein NMB0783 [imported] - Neisseria meningitidis (strain MC58 ... gi\|7226015, gi\|1... - gi\|7226015\|gb\|AAF41196.1\| conserved hypothetical protein [Neisseria meningitidis MC58], gi\|15676681\|...	136.0	[0..25]	[170..5]
gi\|33147849, gi\|... - gi\|33151628\|ref\|NP_872981.1\| periplasmic protein [Haemophilus ducreyi 35000HP], gi\|33147849\|gb\|AAP95... gi\|6969435 - gi\|6969435\|gb\|AAF33778.1\|AF219260_2 unknown [Haemophilus ducreyi]	135.0	[0..24]	[170..2]

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Predicted Domain #1

Region A:
Residues: [1-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQCPAFPGRF LRSSRMQISR HFPRLVRRAA LALCLAGAAQ VHAQEAAVQR KSDYPFAATV  60
   61 ARLQDALRAK GMTIFAVIDH QAAAKQAGLD MPPTQVVVYG NPKAGTPLML AAPDFALELP 120
  121 LKVLVRETAS GEVLVVYHPA GTREGMLGLP AGMAQQLAGA ERIVDAAVRR APAD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	1q9uA
Description:	Crystal structure of hypothetical protein APC35924 from Bacillus stearothermophilus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits