YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33601553, gi\|...
Organism:	Bordetella bronchiseptica RB50
Length:	262 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33601553, gi|....

Description	E-value	Query Range	Subject Range
gi\|33592490, gi\|... - gi\|33592490\|ref\|NP_880134.1\| flagellar biosynthetic protein FliR [Bordetella pertussis Tohama I], gi...	211.0	[0..1]	[262..1]
gi\|73539699, gi\|... - gi\|73539699\|ref\|YP_300066.1\| flagellar biosynthesis protein FliR [Ralstonia eutropha JMP134], gi\|721...	200.0	[0..1]	[260..1]
gi\|115422784, gi... - gi\|187478198\|ref\|YP_786222.1\| flagellar biosynthetic protein [Bordetella avium 197N], gi\|115422784\|e...	189.0	[0..2]	[262..2]
gi\|121598912, gi... - gi\|84519905\|ref\|ZP_01007043.1\| COG1684: Flagellar biosynthesis pathway, component FliR [Burkholderia... gi\|167001621, gi... - gi\|243062631\|gb\|EES44817.1\| flagellar biosynthetic protein FliR [Burkholderia mallei PRL-20], gi\|167... gi\|85066165 - gi\|85066165\|ref\|ZP_01027018.1\| COG1684: Flagellar biosynthesis pathway, component FliR [Burkholderia... gi\|254175309, gi... - gi\|254175309\|ref\|ZP_04881970.1\| flagellar biosynthetic protein FliR [Burkholderia mallei ATCC 10399]... gi\|254357356, gi... - gi\|87316669\|ref\|ZP_01097683.1\| COG1684: Flagellar biosynthesis pathway, component FliR [Burkholderia... gi\|124384712, gi... - gi\|124384712\|ref\|YP_001027836.1\| flagellar biosynthetic protein FliR [Burkholderia mallei NCTC 10229... gi\|53724241, gi\|... - gi\|53724241\|ref\|YP_104208.1\| flagellar biosynthetic protein FliR [Burkholderia mallei ATCC 23344], g... gi\|83620114 - gi\|83620114\|ref\|ZP_00930537.1\| COG1684: Flagellar biosynthesis pathway, component FliR [Burkholderia... gi\|83626098, gi\|... - gi\|83626098\|ref\|ZP_00936324.1\| COG1684: Flagellar biosynthesis pathway, component FliR [Burkholderia... gi\|100916411, gi... - gi\|67635808\|ref\|ZP_00434760.1\| COG1684: Flagellar biosynthesis pathway, component FliR [Burkholderia... gi\|67641566, gi\|... - gi\|67641566\|ref\|ZP_00440342.1\| flagellar biosynthetic protein FliR [Burkholderia mallei GB8 horse 4]... gi\|67646107, gi\|... - gi\|67646107\|ref\|ZP_00444374.1\| COG1684: Flagellar biosynthesis pathway, component FliR [Burkholderia...	189.0	[0..1]	[260..1]
gi\|76580427, gi\|... - gi\|76810974\|ref\|YP_331662.1\| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 1710b], ... gi\|67682208, gi\|... - gi\|90291128\|ref\|ZP_01210762.1\| hypothetical protein Bpse17_02004198 [Burkholderia pseudomallei 1710a... gi\|167908875 - gi\|167908875\|ref\|ZP_02495966.1\| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 112] gi\|52208085, gi\|... - gi\|53717671\|ref\|YP_106657.1\| flagellar biosynthetic protein [Burkholderia pseudomallei K96243], gi\|5...	189.0	[0..1]	[260..1]
gi\|242140984, gi... - gi\|90662062\|ref\|ZP_01249898.1\| hypothetical protein Bpse110_02006039 [Burkholderia pseudomallei 1106... gi\|167916914 - gi\|167916914\|ref\|ZP_02504005.1\| flagellar biosynthetic protein FliR [Burkholderia pseudomallei BCC21... gi\|237506029, gi... - gi\|237814427\|ref\|YP_002898878.1\| flagellar biosynthetic protein FliR [Burkholderia pseudomallei MSHR... gi\|157808738, gi... - gi\|83676800\|ref\|ZP_00938570.1\| COG1684: Flagellar biosynthesis pathway, component FliR [Burkholderia... gi\|67738775, gi\|... - gi\|67738775\|ref\|ZP_00489416.1\| COG1684: Flagellar biosynthesis pathway, component FliR [Burkholderia... gi\|167843672 - gi\|167843672\|ref\|ZP_02469180.1\| flagellar biosynthetic protein FliR [Burkholderia pseudomallei B7210... gi\|169651468, gi... - gi\|67760061\|ref\|ZP_00498787.1\| COG1684: Flagellar biosynthesis pathway, component FliR [Burkholderia... gi\|167892143 - gi\|167892143\|ref\|ZP_02479545.1\| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 7894] gi\|134281514, gi... - gi\|134281514\|ref\|ZP_01768222.1\| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 305],... gi\|167717399 - gi\|167717399\|ref\|ZP_02400635.1\| flagellar biosynthetic protein FliR [Burkholderia pseudomallei DM98] gi\|167813517 - gi\|167813517\|ref\|ZP_02445197.1\| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 91] gi\|82532525, gi\|... - gi\|82532525\|ref\|ZP_00891736.1\| COG1684: Flagellar biosynthesis pathway, component FliR [Burkholderia...	189.0	[0..1]	[260..1]
gi\|67673965, gi\|... - gi\|99913457\|ref\|ZP_01320106.1\| hypothetical protein Bpse1_03000625 [Burkholderia pseudomallei 1655],... gi\|217424090, gi... - gi\|217424090\|ref\|ZP_03455590.1\| flagellar biosynthetic protein FliR [Burkholderia pseudomallei 576],...	188.0	[0..1]	[260..1]
gi\|124871412, gi... - gi\|84356429\|ref\|ZP_00981276.1\| COG1684: Flagellar biosynthesis pathway, component FliR [Burkholderia... gi\|107021597, gi... - gi\|67657420\|ref\|ZP_00454798.1\| Flagellar biosynthesis protein FliR [Burkholderia cenocepacia AU 1054... gi\|116646148, gi... - gi\|67667196\|ref\|ZP_00464426.1\| Flagellar biosynthesis protein FliR [Burkholderia cenocepacia HI2424]... gi\|118711485, gi... - gi\|170731409\|ref\|YP_001763356.1\| flagellar biosynthetic protein FliR [Burkholderia cenocepacia MC0-3...	188.0	[0..1]	[259..1]
gi\|78064696, gi\|... - gi\|78064696\|ref\|YP_367465.1\| flagellar biosynthesis protein FliR [Burkholderia sp. 383], gi\|77965441...	188.0	[0..1]	[260..1]
gi\|15025140, gi\|... - gi\|15895417\|ref\|NP_348766.1\| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium acet... gi\|25500687 - pir\|\|G97164 fusion of flagellar biosynthesis proteins FliR and FlhB [imported] - Clostridium acetobu...	187.0	[0..10]	[259..3]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAFTMEQLN GWLAQFLWPF VRILALVGAA PLFSESTIPT RVKIGLAFML TIAVAPAIGP  60
   61 MPAVPPSSYA GLFLLGQQVL IGIALGLSMR VVFAAVQTAG EFVGLQMGLS FASFFDPATG 120
  121 ANTAVLSRLF NIVAMLVFLA LDGHLLVLGA LVRSFDTLPV AVG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [164-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLDRNGWGIL AEWGTTIFVS GLLLALPLIC ALLTINLAMG ILNRAAPQLS VFAIGFPVSL  60
   61 IVGLVLLAIV LPHSGPFLER LFEQGLNTMN NVANGLAGK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits