YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33576215, gi\|...
Organism:	Bordetella bronchiseptica RB50
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33576215, gi|....

Description	E-value	Query Range	Subject Range
gi\|33573700 - gi\|33573700\|emb\|CAE37993.1\| cytochrome C-type protein [Bordetella parapertussis] gi\|33597273 - gi\|33597273\|ref\|NP_884916.1\| cytochrome C-type protein [Bordetella parapertussis 12822]	338.0	[0..1]	[220..1]
NAPC_PARPN - Cytochrome c-type protein NapC OS=Paracoccus pantotrophus GN=napC PE=4 SV=1 gi\|600095 - gi\|600095\|emb\|CAA85348.1\| membrane-anchored tetrahaem c-type cytochrome [Paracoccus denitrificans]	331.0	[0..4]	[211..11]
gi\|16263125, gi\|... - gi\|16263125\|ref\|NP_435918.1\| NapC membrane-bound tetraheme cytochrome c subunit [Sinorhizobium melil... gi\|25282502 - pir\|\|H95345 NapC membrane protein, e-donor to periplasmic nitrate reductase [imported] - Sinorhizobi...	331.0	[0..1]	[213..1]
gi\|113874545, gi... - gi\|150377297\|ref\|YP_001313892.1\| NapC/NirT family periplasmic nitrate (or nitrite) reductase c-type ...	330.0	[0..1]	[213..1]
gi\|119378021, gi... - gi\|69934858\|ref\|ZP_00629889.1\| NapC/NirT cytochrome c, N-terminal [Paracoccus denitrificans PD1222],...	327.0	[0..5]	[211..12]
NAPC_RHOS4 - Cytochrome c-type protein NapC OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / D...	327.0	[0..3]	[208..2]
gi\|124509783, gi... - gi\|124546731\|ref\|ZP_01705766.1\| periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/N... gi\|82720354, gi\|... - gi\|82742270\|ref\|ZP_00904968.1\| Periplasmic nitrate reductase c-type cytochrome, NapC/NirT [Shewanell... gi\|77812813, gi\|... - gi\|77812813\|ref\|ZP_00812096.1\| NapC/NirT cytochrome c, N-terminal [Shewanella putrefaciens CN-32], g...	326.0	[0..4]	[197..1]
gi\|78360571, gi\|... - gi\|78367336\|ref\|ZP_00837606.1\| NapC/NirT cytochrome c, N-terminal [Shewanella sp. PV-4], gi\|78360571...	326.0	[0..4]	[197..1]
gi\|68514959, gi\|... - gi\|68547314\|ref\|ZP_00586852.1\| NapC/NirT cytochrome c, N-terminal [Shewanella amazonensis SB2B], gi\|...	326.0	[0..4]	[197..1]
gi\|3219735, gi\|3... - gi\|3345491\|dbj\|BAA31963.1\| membrane-anchoring c-type tetraheme cytochrome [Rhodobacter sphaeroides f...	326.0	[0..3]	[207..2]

Back

Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAMRELIKR YWDIIRRPSV HFSLGFLTVG GFVGGILFWG AFNTAMELTN TEQFCTGCHE  60
   61 MRDNVYAELK GTIHYTNRSG VRAICSDCHV PHNWTDKIAR KMQASKEVWG KIFGTINTRE 120
  121 KFVEKRLELA QHEWARLKAN DSLECRNCHN YESMDFTRQS VRAQNMHSTY LADKSKTCID 180
  181 CHKGIAHTLP RMPPDQTSLA PPAAGPAREL ARADTGHAKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.30103
Match:	2j7aC
Description:	No description for 2j7aC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits