YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33576854, gi\|...
Organism:	Bordetella bronchiseptica RB50
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33576854, gi|....

Description	E-value	Query Range	Subject Range
gi\|33566068 - gi\|33566068\|emb\|CAE36967.1\| conserved hypothetical protein [Bordetella parapertussis] gi\|33596299 - gi\|33596299\|ref\|NP_883942.1\| hypothetical protein BPP1666 [Bordetella parapertussis 12822]	199.0	[0..1]	[241..18]
gi\|33592129, gi\|... - gi\|33592129\|ref\|NP_879773.1\| hypothetical protein BP0976 [Bordetella pertussis Tohama I], gi\|3357177...	176.0	[0..21]	[241..1]
gi\|68529910, gi\|... - gi\|94309697\|ref\|YP_582907.1\| NUDIX hydrolase [Ralstonia metallidurans CH34], gi\|93353549\|gb\|ABF07638...	155.0	[0..10]	[235..15]
gi\|46316687, gi\|... - gi\|78065659\|ref\|YP_368428.1\| NUDIX hydrolase [Burkholderia sp. 383], gi\|77966404\|gb\|ABB07784.1\| NUDI...	154.0	[0..15]	[235..4]
gi\|115351003, gi... - gi\|74015854\|ref\|ZP_00686481.1\| NUDIX hydrolase [Burkholderia ambifaria AMMD], gi\|72611283\|gb\|EAO4722...	151.0	[0..15]	[235..4]
gi\|118710951, gi... - gi\|170732384\|ref\|YP_001764331.1\| NUDIX hydrolase [Burkholderia cenocepacia MC0-3], gi\|169815626\|gb\|A... gi\|105892340, gi... - gi\|67659500\|ref\|ZP_00456861.1\| NUDIX hydrolase [Burkholderia cenocepacia AU 1054], gi\|67092879\|gb\|EA... gi\|116689096, gi... - gi\|67665350\|ref\|ZP_00462614.1\| NUDIX hydrolase [Burkholderia cenocepacia HI2424], gi\|67101050\|gb\|EAM...	150.0	[0..15]	[235..4]
gi\|134138261, gi... - gi\|67546778\|ref\|ZP_00424688.1\| NUDIX hydrolase [Burkholderia vietnamiensis G4], gi\|67531881\|gb\|EAM28...	149.0	[0..15]	[235..4]
gi\|84361123 - gi\|84361123\|ref\|ZP_00985803.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ...	146.0	[0..15]	[235..4]
gi\|115422458, gi... - gi\|187477872\|ref\|YP_785896.1\| hydrolase [Bordetella avium 197N], gi\|115422458\|emb\|CAJ48983.1\| putati...	145.0	[0..4]	[233..2]
gi\|83719482, gi\|... - gi\|83719482\|ref\|YP_442202.1\| MutT/NUDIX NTP pyrophosphatase [Burkholderia thailandensis E264], gi\|83...	142.0	[0..5]	[235..114]

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Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSAPSRPR RTPVRPLFDP MAQPWETANQ GLARVDERLL TPPELRSSLR PADHWRLDPL  60
   61 CAAEPRAPGR EGSLVAAAVL IPLVMRADGV RVMLTQRAAH LHDHAGQVSF PGGRIEVSDA 120
  121 TPVAAALREA QEETGLPVQQ VEVLGSMPQY FTATGFAITP VVSLVQPDFE LAPDAFEVAE 180
  181 VFEVPLSFLM DPANHRLYRA ALPDGYVRQY YAMPWQRYFI WGATAGMLRN LYQTVREALP 240
  241 G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.69897
Match:	1nqyA
Description:	Coenzyme A pyrophosphatase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.86119802438676	bayes_pls_golite062009
hydrolase activity	0.104572055301535	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: