YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33577088, gi\|...
Organism:	Bordetella bronchiseptica RB50
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33577088, gi|....

Description	E-value	Query Range	Subject Range
gi\|33574172 - gi\|33574172\|emb\|CAE38504.1\| AsnC-family transcriptional regulator [Bordetella parapertussis] gi\|33597744 - gi\|33597744\|ref\|NP_885387.1\| transcription regulator AsnC [Bordetella parapertussis 12822]	187.0	[0..18]	[183..1]
gi\|33571902, gi\|... - gi\|33592257\|ref\|NP_879901.1\| transcription regulator AsnC [Bordetella pertussis Tohama I], gi\|335719...	185.0	[0..22]	[183..1]
gi\|120554653, gi... - gi\|77952851\|ref\|ZP_00817263.1\| regulatory proteins, AsnC/Lrp [Marinobacter aquaeolei VT8], gi\|778681...	182.0	[0..18]	[180..2]
gi\|34102276, gi\|... - gi\|34496423\|ref\|NP_900638.1\| AsnC family transcriptional regulator [Chromobacterium violaceum ATCC 1...	179.0	[0..22]	[182..1]
gi\|7473996 - pir\|\|F75341 transcription regulator, AsnC family - Deinococcus radiodurans (strain R1) gi\|15806894, gi\|... - gi\|6459677\|gb\|AAF11448.1\|AE002028_10 transcriptional regulator, AsnC family [Deinococcus radiodurans...	178.0	[0..5]	[178..21]
gi\|83716630, gi\|... - gi\|83716630\|ref\|YP_438870.1\| bkd operon transcriptional regulator [Burkholderia thailandensis E264],...	178.0	[0..10]	[178..45]
gi\|46912591, gi\|... - gi\|54308163\|ref\|YP_129183.1\| AsnC family transcriptional regulator [Photobacterium profundum SS9], g...	177.0	[0..26]	[176..3]
gi\|90324070, gi\|... - gi\|90414827\|ref\|ZP_01222794.1\| putative transcriptional regulator, AsnC family protein [Photobacteri...	177.0	[0..26]	[176..3]
gi\|70733484, gi\|... - gi\|70733484\|ref\|YP_263259.1\| AsnC family transcriptional regulator [Pseudomonas fluorescens Pf-5], g...	176.0	[0..22]	[181..1]
gi\|27366417, gi\|... - gi\|27366417\|ref\|NP_761945.1\| transcriptional regulator [Vibrio vulnificus CMCP6], gi\|27362618\|gb\|AAO...	176.0	[0..27]	[177..2]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQNADSLGM KCCDRYFMEL NMPPHALDAI DRRILDLLQT DASLTNVELA RRVHLSPSPC  60
   61 LARVKALEAA GIIRGYVALA DPAQLGLNLN VFIQVSLEKQ VESELERFQG AMADCPEVME 120
  121 CYLMTGDADY LLRVVVADMP GLERFIVNRL SRIPGVKNIR SGFALKQVKY QTALPLRQGS 180
  181 GPQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.522879
Match:	2gqqA
Description:	No description for 2gqqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits