YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33573086
Organism:	Bordetella parapertussis
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33573086.

Description	E-value	Query Range	Subject Range
gi\|24986246, gi\|... - gi\|26991198\|ref\|NP_746623.1\| hypothetical protein PP_4513 [Pseudomonas putida KT2440], gi\|24986246\|g...	186.0	[0..6]	[96..3]
gi\|95111902 - gi\|95111902\|emb\|CAK16626.1\| conserved hypothetical protein, selenoprotein W-related [Pseudomonas ent... gi\|104782915, gi... - gi\|95111902\|emb\|CAK16626.1\| conserved hypothetical protein, selenoprotein W-related [Pseudomonas ent...	183.0	[0..6]	[96..3]
gi\|82713712, gi\|... - gi\|82739217\|ref\|ZP_00902028.1\| SelT/selW/selH selenoprotein [Pseudomonas putida F1], gi\|82713712\|gb\|...	183.0	[0..6]	[96..3]
gi\|49075638 - gi\|49075638\|gb\|AAT49485.1\| PA3338 [synthetic construct]	182.0	[0..5]	[99..2]
gi\|107102870 - gi\|107102870\|ref\|ZP_01366788.1\| hypothetical protein PaerPA_01003938 [Pseudomonas aeruginosa PACS2] gi\|11349873 - pir\|\|D83228 hypothetical protein PA3338 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|32038438, gi\|... - gi\|32038438\|ref\|ZP_00136710.1\| COG3526: Uncharacterized protein conserved in bacteria [Pseudomonas a... gi\|218770689, gi... - gi\|218890466\|ref\|YP_002439330.1\| hypothetical protein PLES_17261 [Pseudomonas aeruginosa LESB58], gi... gi\|9949470, gi\|1... - gi\|9949470\|gb\|AAG06726.1\|AE004756_4 hypothetical protein PA3338 [Pseudomonas aeruginosa PAO1], gi\|15... gi\|84319921, gi\|... - gi\|84319921\|ref\|ZP_00968308.1\| COG3526: Uncharacterized protein conserved in bacteria [Pseudomonas a... gi\|126195403, gi... - gi\|84325991\|ref\|ZP_00974022.1\| COG3526: Uncharacterized protein conserved in bacteria [Pseudomonas a...	182.0	[0..5]	[99..2]
gi\|77381702, gi\|... - gi\|77457699\|ref\|YP_347204.1\| SelT/selW/selH selenoprotein [Pseudomonas fluorescens Pf0-1], gi\|773817...	182.0	[0..8]	[96..5]
gi\|94413596, gi\|... - gi\|94413596\|ref\|ZP_01293475.1\| hypothetical protein PaerP_01004612 [Pseudomonas aeruginosa PA7], gi\|...	179.0	[0..8]	[99..5]
gi\|66046825, gi\|... - gi\|66046825\|ref\|YP_236666.1\| selenoprotein W-related [Pseudomonas syringae pv. syringae B728a], gi\|6...	178.0	[0..5]	[96..2]
gi\|86355902, gi\|... - gi\|86355902\|ref\|YP_467794.1\| hypothetical protein RHE_CH00244 [Rhizobium etli CFN 42], gi\|86280004\|g...	178.0	[0..6]	[96..2]
gi\|113871296, gi... - gi\|150398651\|ref\|YP_001329118.1\| putative selenoprotein [Sinorhizobium medicae WSM419], gi\|150030166...	178.0	[0..7]	[96..3]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITPPDHPPR IAIQYCTQCQ WLLRAAWMAQ ELLSTFGADL GEVALVPGTG GVFRIHYNGA  60
   61 PLWDREVDGG FPEAKVLKQR VRDHLDPGRP LGHIDGRPKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.69897
Match:	2ojlA
Description:	No description for 2ojlA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits