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View Structure Prediction Details

Protein: gi|115457878, gi...
Organism: Oryza sativa Japonica Group
Length: 885 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|115457878, gi....

Predicted Domain #1
Region A:
Residues: [1-114]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKQVKNHRP SVGTDGSREI LMDERNPTMD IVDGISQSVH DSQPDGGQSS RVAMEEDVPS  60
   61 RVGSHDSGHG IPETRNLVPS LDWTEGNPYE KEGAGIPMER MVVDNVDSSA VIPP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [115-216]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EYADPQILTP MLGQRFKTER DAYNFYNVYA VSKGFGIRLD KDRMNTEKQR TMRQICCSHQ  60
   61 GRNPKTKKPS VRIGCPAMMK INRSGAGSGW SVTKVVSTHN HP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 17.431798
Match: PF03101.7
Description: No description for PF03101.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [217-318]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKSVGVTKN YQSHNQIDEG TRGIIEEMVD SSMSLTNMYG MLSGMHGGPS MVPFTRKAMD  60
   61 RLAYAIRRDE SSDDMQKTLD VLKDLQKRSK NFFYSIQVDE AC

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [319-452]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVKNIFWSHA VSRLNFEHFG DVITFDTTYK TNKYNMPFAP FVGVNNHFQS TFFGCALLRE  60
   61 ETEESFTWLF NTFKECMNGK VPIGILTDNC PSMAAAIRTV FPNTIHRVCK WHVLKKAKEF 120
  121 MGNIYSKRHT FKKA

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 40.619789
Match: PF10551.1
Description: No description for PF10551.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [453-563]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FHKVLTQTLT EEEFVAAWHK LIRDYNLEKS VYLRHIWDIR RKWAFVYFSH RFFAGMTTTQ  60
   61 RSESANHVFK MFVSPSSSMN GFVKRYDRFF NEKLQKEDSE EFQTSNDKVE I

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [564-732]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTRSPIEIHA SQVYTRAVFQ LFSEELTDSL SYMVKPGEDE STVQVVRMNS QESFLRKEYQ  60
   61 VSCDLEREEF SCVCKMFEHK GILCSHILRV LVQYGLSRIP ERYILKRWTK DARDTIPPHL 120
  121 HGYKDDVDAS QSRSYRHVML NRKTVEVAKI ANKDVQTFKM AMTVMNKLL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [733-885]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDMKNQLSLD DGDNSREAPK RAARHKSRST VLTEDGNEEV GGGDEDSEYD VPSEDEGGNL  60
   61 TADILPPLKK KSRGRPKVNR YKSGGEVASL KRRKEVGIEK KNTTNECESV EEENQVIDHE 120
  121 DEVPFPRRFC HTCHEAGHNS RTCGRTSTYK RKL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle