YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|22296432, gi\|...
Organism:	Oryza sativa Japonica Group
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22296432, gi|....

Description	E-value	Query Range	Subject Range
gi\|50910651, gi\|... - gi\|50910651\|ref\|XP_466814.1\| glycolipid transfer protein-like [Oryza sativa (japonica cultivar-group...	214.0	[0..1]	[202..1]
GLTP1_ARATH - Glycolipid transfer protein 1 OS=Arabidopsis thaliana GN=GLTP1 PE=2 SV=1	210.0	[0..1]	[202..1]
gi\|73976553 - gi\|73976553\|ref\|XP_539498.2\| PREDICTED: similar to pleckstrin homology domain containing, family A (...	209.0	[0..4]	[197..563]
PKHA8_RAT - Pleckstrin homology domain-containing family A member 8 OS=Rattus norvegicus GN=Plekha8 PE=1 SV=1	204.0	[0..4]	[197..311]
gi\|114612637 - gi\|114612637\|ref\|XP_527709.2\| PREDICTED: pleckstrin homology domain containing, family A (phosphoino...	204.0	[0..4]	[197..310]
gi\|109066999 - gi\|109066999\|ref\|XP_001086395.1\| PREDICTED: similar to pleckstrin homology domain containing, family...	204.0	[0..4]	[197..310]
PKHA8_BOVIN - Pleckstrin homology domain-containing family A member 8 OS=Bos taurus GN=PLEKHA8 PE=3 SV=2	203.0	[0..4]	[197..311]
gi\|30481662, gi\|... - gi\|47716514\|ref\|NP_001001335.1\| pleckstrin homology domain containing, family A (phosphoinositide bi...	202.0	[0..4]	[197..265]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGTVFTPSL QGIKNVKSES GVILTKPFLE VCKHILPVLD KFGSAMSIVK NDIGGNITRL  60
   61 ETKYASDPSK YEQLHSMVKV EISSKTAKSS SSCTNGLLWL TRAMDFLVAL FHNLVQHPDW 120
  121 QMSQACSDAY SKTLKKWHGW LASSSFSVAI KLAPDRKKFM EIISGSGDIN ADIEKFCATF 180
  181 SPLLAENHRF LASVGMDDLK AS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.39794
Match:	1swxA
Description:	Crystal structure of a human glycolipid transfer protein in apo-form
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits