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View Structure Prediction Details

Protein: gi|113611845, gi...
Organism: Oryza sativa Japonica Group
Length: 174 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|113611845, gi....

Description E-value Query
Range
Subject
Range
CX6B1_BOVIN - Cytochrome c oxidase subunit 6B1 OS=Bos taurus GN=COX6B1 PE=1 SV=2
133.0 [0..91] [174..1]

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Predicted Domain #1
Region A:
Residues: [1-81]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGEGKAPT LAAEEHTLPP HEVPVENSSS EKSSDNSVAE VVPEKDAETP AAQDTTSVVE  60
   61 DKSETPEMTA SSEKPEEEGS N

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [82-174]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AATEESNEAE EETIDEKPEI KIETAPADFR FPTTNQTRHC FTRYIEYHRC VAAKGEGAPE  60
   61 CEKFAKYYRS LCPSEWIERW NEQRENGTFP GPL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.69897
Match: 1occH
Description: Cytochrome c oxidase subunit h
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
cytochrome-c oxidase activity 8.77230386960109 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors 8.77230386960109 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor 8.77230386960109 bayes_pls_golite062009
heme-copper terminal oxidase activity 8.46183559370125 bayes_pls_golite062009
oxidoreductase activity 5.63278726556437 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 3.24364609265355 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 3.09509456823261 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 2.46771419705328 bayes_pls_golite062009
cation transmembrane transporter activity 2.2783820574886 bayes_pls_golite062009
catalytic activity 0.287695754348243 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle