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View Structure Prediction Details

Protein: TLP3_ORYSJ
Organism: Oryza sativa Japonica Group
Length: 448 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TLP3_ORYSJ.

Description E-value Query
Range
Subject
Range
gi|125552479 - gi|125552479|gb|EAY98188.1| hypothetical protein OsI_20103 [Oryza sativa Indica Group]
TLP8_ORYSJ - Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1
680.0 [0..1] [448..1]

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Predicted Domain #1
Region A:
Residues: [1-111]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFRSIVRDV RDGFGSLSRR SFEVTLASLY GLTGHHKGKT QSSLDELDDS PAIIPESRWA  60
   61 SLPPELLREV IRRLEADEST WPSRRNVVCF AAVCRTWREM CKETVLSPEF C

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.97
Match: 2e31A
Description: No description for 2e31A was found.

Predicted Domain #2
Region A:
Residues: [112-448]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKLTFPVSIK QPGPRDGMIQ CYIKRNRSKS TYHLYLCLSN VVTAEGGKFV LAAKRHRKTT  60
   61 CTEYTISMVS GNISRSSRTN IGKLRSNFLG TKFIIYDTQP PYNGAVVPHV GRTSKRFNST 120
  121 KVSPKVPSVT YNIAQVSYEL NVLGTRGPRR MRCMMHSIPA SSVEPGGIVP GQPEQIVPRA 180
  181 LEDSFRSTTS FSQSFRSTTS FSKSIMDPSM DFSSARFSDI SGSIMGGDDN GEIKERPLVL 240
  241 RNKPPRWHEQ LQCWCLNFRG RVTIASVKNF QLVAAPSPPP AGAPTPSQPG PADPEKVILQ 300
  301 FGKVARDMFT MDYRYPLSAF QAFAICLSSF DTKLACE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 104.0
Match: 1s31A
Description: Crystal Structure Analysis of the human Tub protein (isoform a) spanning residues 289 through 561
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle