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View Structure Prediction Details

Protein: NPLP3_DROYA
Organism: Drosophila yakuba
Length: 86 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NPLP3_DROYA.

Description E-value Query
Range
Subject
Range
gi|220950800, gi... - gi|220959498|gb|ACL92292.1| Nplp3-PA [synthetic construct], gi|220950800|gb|ACL87943.1| Nplp3-PA [sy...
Nplp3-PA - The gene Neuropeptide-like precursor 3 is referred to in FlyBase by the symbol Dmel\Nplp3 (CG13061, ...
85.0 [0..1] [86..1]
gi|54641302|gb|E... - GA12013-PA [Drosophila pseudoobscura], GA12013 [Drosophila pseudoobscura pseudoobscura]
gi|125977044, gi... - gi|54641302|gb|EAL30052.1| GA12013 [Drosophila pseudoobscura pseudoobscura], gi|125977044|ref|XP_001...
77.0 [0..1] [86..1]

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Predicted Domain #1
Region A:
Residues: [1-86]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKLCVFVAL LSLAAAAPAP APAPGLIAPG LVAPGIWGPT VVGSPLVAPQ VVSVVPGAIS  60
   61 HAAITQVHPS PLLIKSVHGL GPVVIG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.600 d.68.3 SirA-like
View Download 0.600 d.68.3 SirA-like
View Download 0.322 a.61.1 Retroviral matrix proteins
View Download 0.275 a.64.1 Saposin
View Download 0.273 a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.273 a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.258 a.64.1 Saposin
View Download 0.255 a.4.5 "Winged helix" DNA-binding domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle