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View Structure Prediction Details

Protein: gi|31432620, gi|...
Organism: Oryza sativa Japonica Group
Length: 621 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|31432620, gi|....

Description E-value Query
Range
Subject
Range
gi|110289233 - gi|110289233|gb|ABG66132.1| CER1 protein, putative, expressed [Oryza sativa (japonica cultivar-group...
701.0 [0..1] [621..1]
gi|1209703 - gi|1209703|gb|AAB87721.1| maize gl1 homolog [Arabidopsis thaliana]
676.0 [0..1] [618..1]
gi|4769012 - gi|4769012|gb|AAD29719.1|AF143746_1 CER1 [Oryza sativa]
gi|4769012 - gb|AAD29719.1| CER1 [Oryza sativa]
672.0 [0..1] [621..1]
gi|87162521 - gi|87162521|gb|ABD28316.1| Sterol desaturase [Medicago truncatula]
637.0 [0..1] [618..1]

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Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATNPGLFTE WPWKKLGSFK YVLLAPWVAH GWYEVATKGW REVDLGYIAI LPSLLLRMLH  60
   61 NQAWITISRL QNARGRRQIV RRGIEFDQVD RERNWDDQI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [100-287]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ILSGILLYLG ALYVPGGQHL PLWRTDGAGL IALLHAGPVE FLYYWFHRAL HHHFLYTHYH  60
   61 SHHHSSIVTE PITSVIHPFA ELVAYELLFS IPLIACALTG TASIIAFEMY LIYIDFMNNM 120
  121 GHCNFELVPS WLFTWFPPLK YLMYTPSFHS LHHTQFRTNY SLFMPFYDYI YNTMDKSSDT 180
  181 LYENSLKN

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 21.366532
Match: PF04116.4
Description: No description for PF04116.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [288-481]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEEEEAVDVV HLTHLTTLHS IYHMRPGFAE FASRPYVSRW YMRMMWPLSW LSMVLTWTYG  60
   61 SSFTVERNVM KKIRMQSWAI PRYSFHYGLD WEKEAINDLI EKAVCEADKN GAKVVSLGLL 120
  121 NQAHTLNKSG EQYLLKYPKL GARIVDGTSL AAAVVVNSIP QGTDQVILAG NVSKVARAVA 180
  181 QALCKKNIKV TMTN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [482-621]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQDYHLLKPE IPETVADNLS FSKTGTAKVW LIGDGLDSAE QFRAQKGTLF IPYSQFPPKM  60
   61 VRKDSCSYST TPAMAVPKTL QNVHSCENWL PRRVMSAWRI AGILHALEGW NEHECGDKVL 120
  121 DMDKVWSAAI MHGFCPVAQG 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle