YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15642059, gi\|...
Organism:	Vibrio cholerae O1 biovar El Tor str. N16961
Length:	174 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15642059, gi|....

Description	E-value	Query Range	Subject Range
gi\|84377202, gi\|... - gi\|84388135\|ref\|ZP_00991031.1\| Chemotaxis signal transduction protein [Vibrio splendidus 12B01], gi\|...	142.0	[0..11]	[174..1]
gi\|88773938, gi\|... - gi\|88794813\|ref\|ZP_01110518.1\| chemotaxis protein CheW [Alteromonas macleodii 'Deep ecotype'], gi\|88...	142.0	[0..16]	[174..5]
gi\|218321866, gi... - gi\|218708847\|ref\|YP_002416468.1\| Chemotaxis protein cheW [Vibrio splendidus LGP32], gi\|218321866\|emb... gi\|86146112, gi\|... - gi\|86146112\|ref\|ZP_01064438.1\| Chemotaxis signal transduction protein [Vibrio sp. MED222], gi\|858360...	141.0	[0..11]	[174..1]
gi\|37199389, gi\|... - gi\|37680641\|ref\|NP_935250.1\| chemotaxis signal transduction protein [Vibrio vulnificus YJ016], gi\|37... gi\|27361451, gi\|... - gi\|27365304\|ref\|NP_760832.1\| chemotaxis signal transduction protein [Vibrio vulnificus CMCP6], gi\|27...	141.0	[0..11]	[174..1]
gi\|116184400, gi... - gi\|75854966\|ref\|ZP_00762633.1\| COG0835: Chemotaxis signal transduction protein [Vibrio sp. Ex25], gi... gi\|91191655, gi\|... - gi\|91223569\|ref\|ZP_01258834.1\| chemotaxis protein CheW [Vibrio alginolyticus 12G01], gi\|91191655\|gb\|...	140.0	[0..11]	[174..1]
gi\|90579951, gi\|... - gi\|90579951\|ref\|ZP_01235759.1\| putative purine-binding chemotaxis protein CheW [Vibrio angustum S14]...	140.0	[0..11]	[174..1]
gi\|116189024, gi... - gi\|75829271\|ref\|ZP_00758580.1\| COG0835: Chemotaxis signal transduction protein [Vibrio cholerae MO10... gi\|116216058, gi... - gi\|75822830\|ref\|ZP_00752389.1\| COG0835: Chemotaxis signal transduction protein [Vibrio cholerae RC38... gi\|75827368 - gi\|75827368\|ref\|ZP_00756803.1\| COG0835: Chemotaxis signal transduction protein [Vibrio cholerae O395... gi\|75814799 - gi\|75814799\|ref\|ZP_00745347.1\| COG0835: Chemotaxis signal transduction protein [Vibrio cholerae V52] gi\|75818725, gi\|... - gi\|75818725\|ref\|ZP_00748854.1\| COG0835: Chemotaxis signal transduction protein [Vibrio cholerae V51]... tr\|A0A085Q605\|A0... - CheW-like domain protein OS=Vibrio cholerae GN=DA89_246 PE=4 SV=1	140.0	[0..11]	[174..1]
gi\|28807218, gi\|... - gi\|28898999\|ref\|NP_798604.1\| chemotaxis protein CheW [Vibrio parahaemolyticus RIMD 2210633], gi\|2880... gi\|28807218, gi\|... - gi\|6952820\|gb\|AAF32421.1\| chemotaxis protein CheW [Vibrio parahaemolyticus], gi\|28807218\|dbj\|BAC6048... gi\|156527000, gi... - gi\|156975406\|ref\|YP_001446313.1\| hypothetical protein VIBHAR_03137 [Vibrio harveyi ATCC BAA-1116], g... gi\|153836944, gi... - gi\|153836944\|ref\|ZP_01989611.1\| chemotaxis protein CheW [Vibrio parahaemolyticus AQ3810], gi\|1497497...	139.0	[0..11]	[174..1]
gi\|89050701, gi\|... - gi\|89073437\|ref\|ZP_01159960.1\| putative purine-binding chemotaxis protein CheW [Photobacterium sp. S...	139.0	[0..11]	[174..1]
gi\|126637617, gi... - gi\|78366378\|ref\|ZP_00836658.1\| CheW-like protein [Shewanella sp. PV-4], gi\|78361423\|gb\|EAP03247.1\| C...	138.0	[0..11]	[174..1]

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Predicted Domain #1

Region A:
Residues: [1-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETTQRGKG MSQANEVKVR KEKSNDEVLQ WVTFQLEEET YGINVMQVRE VLRYTEIAPV  60
   61 PGAPDYVLGI INLRGNVVTV IDTRSRFGLM QGEITDNTRI IVIESERQVI GILVDSVAEV 120
  121 VYLRSSEIDS TPSVGTDESS KFIQGVSNRD GKLLILVDLN KFLTDEEWDE MAHM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	2ho9A
Description:	No description for 2ho9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits