YRC Public Data Repository - Protein Structure Prediction

Protein:	DMA_VIBCH
Organism:	Vibrio cholerae O1 biovar El Tor str. N16961
Length:	277 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DMA_VIBCH.

Description	E-value	Query Range	Subject Range
gi\|54307504, gi\|... - gi\|54307504\|ref\|YP_128524.1\| putative DNA adenine methylase [Photobacterium profundum SS9], gi\|46911...	359.0	[0..1]	[276..1]
gi\|227883517, gi... - gi\|227883517\|ref\|ZP_04001322.1\| site-specific DNA-methyltransferase (adenine-specific) [Escherichia ... gi\|237703114, gi... - gi\|237703114\|ref\|ZP_04533595.1\| DNA adenine methylase [Escherichia sp. 3_2_53FAA], gi\|226902378\|gb\|E... gi\|75516145, gi\|... - gi\|75516145\|ref\|ZP_00738263.1\| COG0338: Site-specific DNA methylase [Escherichia coli 53638], gi\|188... gi\|254038551, gi... - gi\|254038551\|ref\|ZP_04872607.1\| DNA adenine methylase [Escherichia sp. 1_1_43], gi\|226839057\|gb\|EEH7... gi\|75241523, gi\|... - gi\|75241523\|ref\|ZP_00725368.1\| COG0338: Site-specific DNA methylase [Escherichia coli F11], gi\|19117... gi\|26249981, gi\|... - gi\|26249981\|ref\|NP_756021.1\| DNA adenine methylase [Escherichia coli CFT073], gi\|26110410\|gb\|AAN8259... gi\|117625655, gi... - gi\|117625655\|ref\|YP_858978.1\| DNA adenine methylase [Escherichia coli APEC O1], gi\|115514779\|gb\|ABJ0... gi\|91212859, gi\|... - gi\|91212859\|ref\|YP_542845.1\| DNA adenine methylase [Escherichia coli UTI89], gi\|91074433\|gb\|ABE09314... gi\|110345213, gi... - gi\|110643621\|ref\|YP_671351.1\| DNA adenine methylase [Escherichia coli 536], gi\|110345213\|gb\|ABG71450... gi\|170683954, gi... - gi\|170683954\|ref\|YP_001745630.1\| DNA adenine methylase [Escherichia coli SMS-3-5], gi\|170521672\|gb\|A... gi\|218367213, gi... - gi\|218560444\|ref\|YP_002393357.1\| DNA adenine methylase [Escherichia coli S88], gi\|218367213\|emb\|CAR0... gi\|215266740, gi... - gi\|215488668\|ref\|YP_002331099.1\| DNA adenine methylase [Escherichia coli O127:H6 str. E2348/69], gi\|... gi\|218702130, gi... - gi\|218702130\|ref\|YP_002409759.1\| DNA adenine methylase [Escherichia coli IAI39], gi\|218372116\|emb\|CA... gi\|218691663, gi... - gi\|218691663\|ref\|YP_002399875.1\| DNA adenine methylase [Escherichia coli ED1a], gi\|218429227\|emb\|CAR...	359.0	[0..1]	[277..1]
gi\|110807219, gi... - gi\|110807219\|ref\|YP_690739.1\| DNA adenine methylase [Shigella flexneri 5 str. 8401], gi\|110616767\|gb... gi\|24053854, gi\|... - gi\|24114650\|ref\|NP_709160.1\| DNA adenine methylase [Shigella flexneri 2a str. 301], gi\|24053854\|gb\|A... gi\|30065329, gi\|... - gi\|30065329\|ref\|NP_839500.1\| DNA adenine methylase [Shigella flexneri 2a str. 2457T], gi\|30043591\|gb...	358.0	[0..1]	[277..1]
gi\|208812917, gi... - gi\|208812917\|ref\|ZP_03254246.1\| DNA adenine methylase [Escherichia coli O157:H7 str. EC4045], gi\|208... gi\|208820095, gi... - gi\|208820095\|ref\|ZP_03260415.1\| DNA adenine methylase [Escherichia coli O157:H7 str. EC4042], gi\|208... gi\|209396342, gi... - gi\|209396342\|ref\|YP_002272821.1\| DNA adenine methylase [Escherichia coli O157:H7 str. EC4115], gi\|20... gi\|209920839, gi... - gi\|209920839\|ref\|YP_002294923.1\| DNA adenine methylase [Escherichia coli SE11], gi\|209914098\|dbj\|BAG... EG10204 - DNA adenine methyltransferase / DNA-(adenine-N6)-methyltransferase, methylates GATC; role in repair ... gi\|217325932, gi... - gi\|217325932\|ref\|ZP_03442016.1\| DNA adenine methylase [Escherichia coli O157:H7 str. TW14588], gi\|21... gi\|218555932, gi... - gi\|218555932\|ref\|YP_002388845.1\| DNA adenine methylase [Escherichia coli IAI1], gi\|218362700\|emb\|CAR... DMA_ECO57 - DNA adenine methylase OS=Escherichia coli O157:H7 GN=dam PE=3 SV=1 gi\|218353799, gi... - gi\|218697067\|ref\|YP_002404734.1\| DNA adenine methylase [Escherichia coli 55989], gi\|218353799\|emb\|CA... EG10204 - DNA adenine methyltransferase / DNA-(adenine-N6)-methyltransferase, methylates GATC; role in repair ... gi\|12518007, gi\|... - gi\|15803890\|ref\|NP_289926.1\| DNA adenine methylase [Escherichia coli O157:H7 EDL933], gi\|12518007\|gb... gi\|75236988, gi\|... - gi\|75236988\|ref\|ZP_00721044.1\| COG0338: Site-specific DNA methylase [Escherichia coli E110019], gi\|1... gi\|187771540, gi... - gi\|187771540\|gb\|EDU35384.1\| DNA adenine methylase [Escherichia coli O157:H7 str. EC4196], gi\|1687727... gi\|193061744, gi... - gi\|75260324\|ref\|ZP_00731592.1\| COG0338: Site-specific DNA methylase [Escherichia coli E22], gi\|19306... gi\|189002487, gi... - gi\|189002487\|gb\|EDU71473.1\| DNA adenine methylase [Escherichia coli O157:H7 str. EC4076], gi\|1687794... gi\|75211753, gi\|... - gi\|75211753\|ref\|ZP_00711817.1\| COG0338: Site-specific DNA methylase [Escherichia coli B171], gi\|1944... gi\|168785188, gi... - gi\|189374291\|gb\|EDU92707.1\| DNA adenine methylase [Escherichia coli O157:H7 str. EC869], gi\|16878518... gi\|191167910, gi... - gi\|75228959\|ref\|ZP_00715551.1\| COG0338: Site-specific DNA methylase [Escherichia coli B7A], gi\|19116... gi\|189379959, gi... - gi\|189379959\|gb\|EDU98375.1\| DNA adenine methylase [Escherichia coli O157:H7 str. EC508], gi\|16879715... gi\|170018377, gi... - gi\|170018377\|ref\|YP_001723331.1\| DNA adenine methylase [Escherichia coli ATCC 8739], gi\|169753305\|gb... gi\|170082904, gi... - gi\|170082904\|ref\|YP_001732224.1\| DNA adenine methylase [Escherichia coli str. K-12 substr. DH10B], g... gi\|81247153, gi\|... - gi\|82545742\|ref\|YP_409689.1\| DNA adenine methylase [Shigella boydii Sb227], gi\|81247153\|gb\|ABB67861.... gi\|195934875 - gi\|195934875\|ref\|ZP_03080257.1\| DNA adenine methylase [Escherichia coli O157:H7 str. EC4024] gi\|89110623, gi\|... - gi\|89110623\|ref\|AP_004403.1\| DNA adenine methylase [Escherichia coli str. K-12 substr. W3110], gi\|85... gi\|208728770, gi... - gi\|208808969\|ref\|ZP_03251306.1\| DNA adenine methylase [Escherichia coli O157:H7 str. EC4206], gi\|208... gi\|75188161, gi\|... - gi\|75188161\|ref\|ZP_00701428.1\| COG0338: Site-specific DNA methylase [Escherichia coli E24377A], gi\|1... gi\|157162863, gi... - gi\|75197318\|ref\|ZP_00707388.1\| COG0338: Site-specific DNA methylase [Escherichia coli HS], gi\|157162... gi\|83585102, gi\|... - gi\|83585102\|ref\|ZP_00923754.1\| COG0338: Site-specific DNA methylase [Escherichia coli 101-1], gi\|194... gi\|187730578, gi... - gi\|75179995\|ref\|ZP_00699982.1\| COG0338: Site-specific DNA methylase [Shigella boydii BS512], gi\|1877... gi\|15833483, gi\|... - gi\|15833483\|ref\|NP_312256.1\| DNA adenine methylase [Escherichia coli O157:H7 str. Sakai], gi\|1336370... gi\|238860809, gi... - gi\|238902478\|ref\|YP_002928274.1\| DNA adenine methylase [Escherichia coli BW2952], gi\|238860809\|gb\|AC... gi\|251786640, gi... - gi\|251786640\|ref\|YP_003000944.1\| hypothetical protein B21_03191 [Escherichia coli BL21], gi\|24237891... gi\|253979372, gi... - gi\|254290065\|ref\|YP_003055813.1\| DNA adenine methylase [Escherichia coli BL21(DE3)], gi\|253979372\|gb... gi\|253975216, gi... - gi\|254163315\|ref\|YP_003046423.1\| DNA adenine methylase [Escherichia coli B str. REL606], gi\|25397521... gi\|254795301, gi... - gi\|254795301\|ref\|YP_003080138.1\| DNA adenine methylase [Escherichia coli O157:H7 str. TW14359], gi\|2... gi\|124528161, gi... - gi\|124528161\|ref\|ZP_01699494.1\| DNA adenine methylase [Escherichia coli B], gi\|124500816\|gb\|EAY48285... DMA_ECOLI - DNA adenine methylase (EC 2.1.1.72) (Deoxyadenosyl-methyltransferase) (DNA adenine methyltransferase... gi\|188014219, gi... - gi\|188014219\|gb\|EDU52341.1\| DNA adenine methylase [Escherichia coli O157:H7 str. EC4113], gi\|1687518... gi\|168753136, gi... - gi\|189359276\|gb\|EDU77695.1\| DNA adenine methylase [Escherichia coli O157:H7 str. EC4401], gi\|1687531... gi\|189369482, gi... - gi\|189369482\|gb\|EDU87898.1\| DNA adenine methylase [Escherichia coli O157:H7 str. EC4501], gi\|1687594... gi\|168765731, gi... - gi\|189364494\|gb\|EDU82913.1\| DNA adenine methylase [Escherichia coli O157:H7 str. EC4486], gi\|1687657...	357.0	[0..1]	[277..1]
gi\|90413591, gi\|... - gi\|90413591\|ref\|ZP_01221581.1\| putative DNA adenine methylase [Photobacterium profundum 3TCK], gi\|90...	357.0	[0..1]	[276..1]
gi\|28807752, gi\|... - gi\|28899516\|ref\|NP_799121.1\| DNA adenine methylase [Vibrio parahaemolyticus RIMD 2210633], gi\|288077... gi\|28807752 - gi\|28807752\|dbj\|BAC61005.1\| DNA adenine methylase [Vibrio parahaemolyticus RIMD 2210633]	357.0	[0..1]	[277..1]
gi\|37199921, gi\|... - gi\|37681170\|ref\|NP_935779.1\| site-specific DNA methylase [Vibrio vulnificus YJ016], gi\|37199921\|dbj\|...	356.0	[0..1]	[275..1]
gi\|27364779, gi\|... - gi\|27364779\|ref\|NP_760307.1\| site-specific DNA methylase [Vibrio vulnificus CMCP6], gi\|27360924\|gb\|A...	355.0	[0..1]	[275..1]
gi\|82778798, gi\|... - gi\|82778798\|ref\|YP_405147.1\| DNA adenine methylase [Shigella dysenteriae Sd197], gi\|81242946\|gb\|ABB6...	355.0	[0..1]	[277..1]
gi\|73857369, gi\|... - gi\|74313892\|ref\|YP_312311.1\| DNA adenine methylase [Shigella sonnei Ss046], gi\|73857369\|gb\|AAZ90076.... gi\|194434647, gi... - gi\|194434647\|ref\|ZP_03066902.1\| DNA adenine methylase [Shigella dysenteriae 1012], gi\|194417106\|gb\|E...	355.0	[0..1]	[277..1]

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Predicted Domain #1

Region A:
Residues: [1-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKQRAFLKW AGGKYSLVED IQRHLPEARE LVEPFVGAGS VFLNTDFERY LLADINPDLI  60
   61 NFYNLLKTEP QAYIHEAKRW FVPENNRKEV YLDIRKQFNQ SDDAMFRSLA FLYMNRFGFN 120
  121 GLCRYNKKGG FNVPFGSYKK PYFPEQELEF FAEKAQRATF ICASYGETFA RAQSDSVIYC 180
  181 DPPYAPLSTT ANFTSYAGNG FTLDDQAALA DIAEKTAKER GISVLISNHD TTHTRRLYRG 240
  241 AQLNVVKANR TISRNGAGRN KVDELLALFT PHLSSQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	100.0
Match:	2oreD
Description:	No description for 2oreD was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits