YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9657436, gi\|1...
Organism:	Vibrio cholerae O1 biovar El Tor str. N16961
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9657436, gi|1....

Description	E-value	Query Range	Subject Range
DEOD_XENNA - Purine nucleoside phosphorylase DeoD-type OS=Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 /... DEOD_XENNE - Purine nucleoside phosphorylase deoD-type OS=Xenorhabdus nematophilus GN=deoD PE=3 SV=1	232.0	[0..10]	[242..1]
gi\|77973607 - gi\|77973607\|ref\|ZP_00829153.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia frederiksenii ATCC...	230.0	[0..10]	[242..1]
DEOD_PHOLL - Purine nucleoside phosphorylase deoD-type OS=Photorhabdus luminescens subsp. laumondii GN=deoD PE=3 ... DEOD_PHOLL - Purine nucleoside phosphorylase DeoD-type OS=Photorhabdus luminescens subsp. laumondii (strain DSM 1...	230.0	[0..10]	[242..1]
gi\|77959706 - gi\|77959706\|ref\|ZP_00823723.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia bercovieri ATCC 43...	230.0	[0..10]	[242..1]
gi\|77960324 - gi\|77960324\|ref\|ZP_00824201.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia mollaretii ATCC 43...	229.0	[0..10]	[242..1]
gi\|77977211 - gi\|77977211\|ref\|ZP_00832666.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia intermedia ATCC 29...	229.0	[0..10]	[242..1]
DEOD_PECAS - Purine nucleoside phosphorylase DeoD-type OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BA... DEOD_ERWCT - Purine nucleoside phosphorylase deoD-type OS=Erwinia carotovora subsp. atroseptica GN=deoD PE=3 SV=1	229.0	[0..10]	[242..1]
gi\|227885127, gi... - gi\|227885127\|ref\|ZP_04002932.1\| purine-nucleoside phosphorylase [Escherichia coli 83972], gi\|2278379... gi\|26111707, gi\|... - gi\|26251274\|ref\|NP_757314.1\| purine nucleoside phosphorylase [Escherichia coli CFT073], gi\|26111707\|...	228.0	[0..9]	[242..19]
DEOD_YERPB - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) ... DEOD_YERP3 - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31... DEOD_YERPY - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII)... DEOD_YERPS - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pseudotuberculosis serotype I (strain IP32953)... DEOD_YERPS - Purine nucleoside phosphorylase deoD-type OS=Yersinia pseudotuberculosis GN=deoD PE=3 SV=1	228.0	[0..10]	[242..1]
DEOD_YERPE - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pestis GN=deoD PE=3 SV=1 gi\|167470356 - gi\|167470356\|ref\|ZP_02335060.1\| purine nucleoside phosphorylase [Yersinia pestis FV-1] DEOD_YERPG - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pestis bv. Antiqua (strain Angola) GN=deoD PE=... gi\|115346250, gi... - gi\|218927639\|ref\|YP_002345514.1\| purine nucleoside phosphorylase [Yersinia pestis CO92], gi\|16120771... gi\|165927348, gi... - gi\|165927348\|ref\|ZP_02223180.1\| purine nucleoside phosphorylase [Yersinia pestis biovar Orientalis s... gi\|166008763, gi... - gi\|166008763\|ref\|ZP_02229661.1\| purine nucleoside phosphorylase [Yersinia pestis biovar Antiqua str.... gi\|166206924, gi... - gi\|166212178\|ref\|ZP_02238213.1\| purine nucleoside phosphorylase [Yersinia pestis biovar Antiqua str.... gi\|167400482, gi... - gi\|167400482\|ref\|ZP_02305991.1\| purine nucleoside phosphorylase [Yersinia pestis biovar Antiqua str.... gi\|166963063, gi... - gi\|167419069\|ref\|ZP_02310822.1\| purine nucleoside phosphorylase [Yersinia pestis biovar Orientalis s... gi\|167054958, gi... - gi\|167426035\|ref\|ZP_02317788.1\| purine nucleoside phosphorylase [Yersinia pestis biovar Mediaevalis ... DEOD_YERPA - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=deoD PE... DEOD_YERPN - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=deoD P... gi\|229842403, gi... - gi\|229842403\|ref\|ZP_04462558.1\| purine-nucleoside phosphorylase [Yersinia pestis biovar Orientalis s... gi\|229840324, gi... - gi\|229840324\|ref\|ZP_04460483.1\| purine-nucleoside phosphorylase [Yersinia pestis biovar Orientalis s... gi\|150260522, gi... - gi\|150260522\|ref\|ZP_01917250.1\| purine nucleoside phosphorylase [Yersinia pestis CA88-4125], gi\|1492... gi\|229705922, gi... - gi\|229836979\|ref\|ZP_04457144.1\| purine-nucleoside phosphorylase [Yersinia pestis Pestoides A], gi\|22... DEOD_YERPP - Purine nucleoside phosphorylase DeoD-type OS=Yersinia pestis (strain Pestoides F) GN=deoD PE=3 SV=1 gi\|165915653, gi... - gi\|89104403\|ref\|ZP_01176947.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia pestis biovar Orie...	227.0	[0..10]	[242..1]

Back

Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKLNWRVTM ATPHINAQPG DFAETVLMPG DPLRAKYIAE TFLEDVKQVC DVRSMFGFTG  60
   61 TYKGKKVSVM GHGMGIPSCS IYVHELIAEY GVKNIIRIGS CGAVRDDVKL MDVVIGMGAS 120
  121 TDSKVNRIRF SGHDFAAIAD YDLLETAVNQ ARAQQVPVKV GNVFSADLFY TPEPEIFEKM 180
  181 KKLGILGVDM EAAGIYGVAA DLGARALTIL TVSDHILRGE KLSSEDRQKS FNDMMKVALE 240
  241 TAINI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.221849
Match:	1pr0A
Description:	Escherichia coli Purine Nucleoside Phosphorylase Complexed with Inosine and Phosphate/Sulfate
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
purine-nucleoside phosphorylase activity	3.68206997938506	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	3.66765825367784	bayes_pls_golite062009
catalytic activity	2.18268586151113	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	2.01261001022129	bayes_pls_golite062009
S-methyl-5-thioadenosine phosphorylase activity	1.6959166270803	bayes_pls_golite062009
transferase activity	1.42022417161912	bayes_pls_golite062009
nucleobase binding	1.33291775180025	bayes_pls_golite062009
nucleoside binding	1.11256863177576	bayes_pls_golite062009
purine binding	1.00226077276304	bayes_pls_golite062009
binding	0.192121943858605	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: