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View Structure Prediction Details

Protein: gi|34499266, gi|...
Organism: Chromobacterium violaceum ATCC 12472
Length: 147 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34499266, gi|....

Description E-value Query
Range
Subject
Range
gi|54310531, gi|... - gi|54310531|ref|YP_131551.1| putative type II secretory pathway, pseudopilin EpsG [Photobacterium pr...
166.0 [0..5] [144..12]

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Predicted Domain #1
Region A:
Residues: [1-147]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQLKRAAQR GFTLIEIMVV IVILGVLAAL VVPKVMSRPD EARIVAAKQD IGAISQALKL  60
   61 YRLDNGRYPS TDQGLSALVQ KPTAAPEPKN WKPGGYLERL PKDPWGNAYQ YANPGTHGEI 120
  121 DIWSFGADGE PGGEGNDADI GNWDSGK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.30103
Match: 1t92A
Description: Crystal structure of N-terminal truncated pseudopilin PulG
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
protein transporter activity 8.7545256796234 bayes_pls_golite062009
transporter activity 2.74044424168852 bayes_pls_golite062009
substrate-specific transporter activity 2.55698329173896 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle