YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|46390950, gi\|...
Organism:	Oryza sativa Japonica Group
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46390950, gi|....

Description	E-value	Query Range	Subject Range
gi\|114559987 - gi\|114559987\|ref\|XP_524894.2\| PREDICTED: similar to DPM3 protein [Pan troglodytes]	129.0	[0..16]	[111..36]
gi\|74355449 - gi\|74355449\|gb\|AAI04482.1\| DPM3 protein [Homo sapiens]	128.0	[0..16]	[111..10]
gi\|73961608 - gi\|73961608\|ref\|XP_855046.1\| PREDICTED: similar to Dolichol-phosphate mannosyltransferase subunit 3 ...	127.0	[0..18]	[111..54]
gi\|67541657, gi\|... - gi\|67541657\|ref\|XP_664596.1\| hypothetical protein AN6992.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	108.0	[0..28]	[114..1]
gi\|21553435, gi\|... - gi\|28973443\|gb\|AAO64046.1\| unknown protein [Arabidopsis thaliana], gi\|26451193\|dbj\|BAC42700.1\| unkno...	106.0	[0..28]	[116..1]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVWCWCIERQ LVARDPRSLS SKHLVSQMKH IFKIIAMLVA VSAIWIALLE TATVPRSYTW  60
   61 LLPIYLVVAL GCYGLFMVGF GLMFFPTCPQ EAVLLQQDIL EAKEFLSKKG VDVGSE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	45.508638
Match:	PF08285.3
Description:	No description for PF08285.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits