YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|215737469, gi...
Organism:	Oryza sativa Japonica Group
Length:	469 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215737469, gi....

Description	E-value	Query Range	Subject Range
gi\|53728718 - gi\|53728718\|ref\|ZP_00131820.2\| COG0859: ADP-heptose:LPS heptosyltransferase [Haemophilus somnus 2336...	224.0	[0..112]	[460..30]
gi\|9654644, gi\|1... - gi\|9654644\|gb\|AAF93412.1\| ADP-heptose--LPS heptosyltransferase II [Vibrio cholerae O1 biovar El Tor ... gi\|11279322 - pir\|\|F82349 ADP-heptose-LPS heptosyltransferase II VC0236 [imported] - Vibrio cholerae (strain N1696... gi\|229606472, gi... - gi\|229606472\|ref\|YP_002877120.1\| hypothetical protein VCD_001381 [Vibrio cholerae MJ-1236], gi\|22936... gi\|121549452, gi... - gi\|121586332\|ref\|ZP_01676121.1\| ADP-heptose--LPS heptosyltransferase II [Vibrio cholerae 2740-80], g... gi\|125618963 - gi\|125618963\|gb\|EAZ47495.1\| ADP-heptose--LPS heptosyltransferase II [Vibrio cholerae MO10] gi\|153221435, gi... - gi\|153221435\|ref\|ZP_01952393.1\| ADP-heptose--LPS heptosyltransferase II [Vibrio cholerae MAK 757], g... gi\|229509334, gi... - gi\|229509334\|ref\|ZP_04398817.1\| hypothetical protein VCE_000734 [Vibrio cholerae B33], gi\|229353649\|... gi\|126511184, gi... - gi\|153818295\|ref\|ZP_01970962.1\| ADP-heptose--LPS heptosyltransferase II [Vibrio cholerae NCTC 8457],... gi\|229506964, gi... - gi\|229506964\|ref\|ZP_04396472.1\| hypothetical protein VCF_002188 [Vibrio cholerae BX 330286], gi\|2293... gi\|229516281, gi... - gi\|229516281\|ref\|ZP_04405729.1\| hypothetical protein VCC_000295 [Vibrio cholerae RC9], gi\|229346707\|... gi\|227012083, gi... - gi\|227116633\|ref\|YP_002818529.1\| ADP-heptose--LPS heptosyltransferase II [Vibrio cholerae O395], gi\|... gi\|227080456, gi... - gi\|227080456\|ref\|YP_002809007.1\| ADP-heptose--LPS heptosyltransferase II [Vibrio cholerae M66-2], gi...	221.0	[0..115]	[463..1]
gi\|254229461, gi... - gi\|75856073\|ref\|ZP_00763708.1\| COG0859: ADP-heptose:LPS heptosyltransferase [Vibrio sp. Ex25], gi\|25...	221.0	[0..115]	[458..1]
gi\|27364247, gi\|... - gi\|27364247\|ref\|NP_759775.1\| ADP-heptose--LPS heptosyltransferase II WaaF [Vibrio vulnificus CMCP6],...	221.0	[0..115]	[458..1]
gi\|37197249, gi\|... - gi\|37678509\|ref\|NP_933118.1\| ADP-heptose:LPS heptosyltransferase [Vibrio vulnificus YJ016], gi\|37197...	220.0	[0..115]	[458..1]
gi\|2145518, gi\|5... - gi\|599920\|emb\|CAA85504.1\| ADP-heptose:LPS heptosyltransferase II [Neisseria gonorrhoeae], pir\|\|S6129...	220.0	[0..117]	[457..4]
gi\|59718267, gi\|... - gi\|59801372\|ref\|YP_208084.1\| ADP-heptose--LPS heptosyltransferase II [Neisseria gonorrhoeae FA 1090]...	220.0	[0..117]	[457..4]
gi\|112823791, gi... - gi\|113461748\|ref\|YP_719817.1\| ADP-heptose--LPS heptosyltransferase II [Haemophilus somnus 129PT], gi...	220.0	[0..116]	[460..1]
gi\|90437980, gi\|... - gi\|90580909\|ref\|ZP_01236711.1\| ADP-heptose:LPS heptosyltransferase [Vibrio angustum S14], gi\|9043798...	219.0	[0..116]	[458..1]
gi\|75828225 - gi\|75828225\|ref\|ZP_00757660.1\| COG0859: ADP-heptose:LPS heptosyltransferase [Vibrio cholerae O395] gi\|75831227, gi\|... - gi\|75831227\|ref\|ZP_00760493.1\| COG0859: ADP-heptose:LPS heptosyltransferase [Vibrio cholerae MO10], ... tr\|C6YLB4\|C6YLB4... - ADP-heptose-LPS heptosyltransferase II OS=Vibrio cholerae MO10 GN=VchoM_03512 PE=4 SV=1	218.0	[0..116]	[463..1]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTPTMSTSM ATPAKLPSPP SLPIARQCCC HLLQLGRRGG AGVARASAKK KNPWLDPFDD  60
   61 GPDDEFDYRG AFSGGKQEED PRPPEDPANP YGFLRFPAGY NPELDSLASK VRRD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.223	d.58.10	Acylphosphatase-like
View	Download	0.210	d.58.7	RNA-binding domain, RBD
View	Download	0.207	d.26.1	FKBP-like
View	Download	0.207	d.26.1	FKBP-like
View	Download	0.204	d.58.18	Regulatory domain in the aminoacid metabolism

Predicted Domain #2

Region A:
Residues: [115-469]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VRRACCVVSG GVYENVLFFP VVQLLRDRYP GVVVDVVASA RGKQVYEMCK NVRYADVYDP  60
   61 DDDWPEPAEY THQLGVLKNR YYDLIISTKL AGIGHALFLF MSSARDKVGY VYPNVNSAGA 120
  121 GLFLTEMFRP PTTNLADSGY NMYQDMLEWI GRPAKGVPEH PVPPLRVSIS KKLRAFVEDK 180
  181 YSRAGVEKGK FVVVHGIASD SFANMRSRGD DDCLLPLEHW AEIAKEISSE DNGLKPLFVI 240
  241 PHQKHREEVE ETVGKDTNIL FITTPGQLTC LINDSVGVVA TNTAAVQLAN ARDKPCVALF 300
  301 SSKEKARLFL PYLEEKKGCT VVASETGKLI DIDVEAVKKA VKEFKAAPSV ALAQT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.30103
Match:	1pswA
Description:	ADP-heptose LPS heptosyltransferase II
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits