YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|50944003, gi|...
Organism: Oryza sativa Japonica Group
Length: 660 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50944003, gi|....

Description E-value Query
Range		 Subject
Range
gi|73976803 - gi|73976803|ref|XP_857821.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform 2 ...
 514.0 [0..30] [654..2]

Back

Predicted Domain #1
Region A:
Residues: [1-210] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAQVQAVPA AEGGGAPPQA NGVVAAGSAA AAAATFQATS LYVGDLDVSV QDAQLFDVFS  60
   61 QVGSVVSVRV CRDVNTRLSL GYAYVNFSSP ADAARALEML NFTPINGKPI RIMYSNRDPS 120
  121 SRKSGAANIF IKNLDKSIDN KALYDTFSVF GNILSCKVAT EMSGESKGYG FVQFELEEAA 180
  181 QNAISKLNGM LLNDKKVYVG PFVRKQEREN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.09691
Match: 1cvjA
Description: Poly(A)-binding protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
RNA binding 6.73097473547076 bayes_pls_golite062009
6.62953239642182 bayes_pls_golite062009
mRNA binding 5.29759606920196 bayes_pls_golite062009
nucleic acid binding 4.92126426323641 bayes_pls_golite062009
snRNA binding 4.06596327298973 bayes_pls_golite062009
binding 3.64400841800969 bayes_pls_golite062009
poly-pyrimidine tract binding 3.11990160533699 bayes_pls_golite062009
U1 snRNA binding 3.02511982045347 bayes_pls_golite062009
single-stranded RNA binding 2.93798024346416 bayes_pls_golite062009
poly(U) RNA binding 2.49013736906028 bayes_pls_golite062009
transcription regulator activity 2.18211199677674 bayes_pls_golite062009
DNA binding 1.98418556946403 bayes_pls_golite062009
structural molecule activity 1.56454315220334 bayes_pls_golite062009
U2 snRNA binding 1.34078165372485 bayes_pls_golite062009
protein binding 1.12215421354121 bayes_pls_golite062009
transcription factor activity 1.07843408116687 bayes_pls_golite062009
transcription repressor activity 1.06887262556449 bayes_pls_golite062009
mRNA 3'-UTR binding 0.824614388276642 bayes_pls_golite062009
eukaryotic initiation factor 4G binding 0.597542453741953 bayes_pls_golite062009
transporter activity 0.417047632648771 bayes_pls_golite062009
hydrolase activity 0.389390547875764 bayes_pls_golite062009
sequence-specific DNA binding 0.383589644462932 bayes_pls_golite062009
transmembrane transporter activity 0.288804044686487 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.00171911393626201 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [211-293] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSGNPKFNNV YVKNLSESTT EDNLKEIFGK FGPITSVVVM REGDGKSRCF GFVNFENPDD  60
   61 AARAVEDLNG KKFDDKEWYV CRA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.39794
Match: 1sjqA
Description: NMR Structure of RRM1 from Human Polypyrimidine Tract Binding Protein Isoform 1 (PTB1)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
RNA binding 6.73097473547076 bayes_pls_golite062009
6.62953239642182 bayes_pls_golite062009
mRNA binding 5.29759606920196 bayes_pls_golite062009
nucleic acid binding 4.92126426323641 bayes_pls_golite062009
snRNA binding 4.06596327298973 bayes_pls_golite062009
binding 3.64400841800969 bayes_pls_golite062009
poly-pyrimidine tract binding 3.11990160533699 bayes_pls_golite062009
U1 snRNA binding 3.02511982045347 bayes_pls_golite062009
single-stranded RNA binding 2.93798024346416 bayes_pls_golite062009
poly(U) RNA binding 2.49013736906028 bayes_pls_golite062009
transcription regulator activity 2.18211199677674 bayes_pls_golite062009
DNA binding 1.98418556946403 bayes_pls_golite062009
structural molecule activity 1.56454315220334 bayes_pls_golite062009
U2 snRNA binding 1.34078165372485 bayes_pls_golite062009
protein binding 1.12215421354121 bayes_pls_golite062009
transcription factor activity 1.07843408116687 bayes_pls_golite062009
transcription repressor activity 1.06887262556449 bayes_pls_golite062009
mRNA 3'-UTR binding 0.824614388276642 bayes_pls_golite062009
eukaryotic initiation factor 4G binding 0.597542453741953 bayes_pls_golite062009
transporter activity 0.417047632648771 bayes_pls_golite062009
hydrolase activity 0.389390547875764 bayes_pls_golite062009
sequence-specific DNA binding 0.383589644462932 bayes_pls_golite062009
transmembrane transporter activity 0.288804044686487 bayes_pls_golite062009
nucleoside-triphosphatase activity 0.00171911393626201 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [294-435] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKKSEREMEL KEKFEKNIKE AADKNQGTNL YLKNLDDSID DDEKLKEIFA DFGTITSCKV  60
   61 MRDLNGVSKG SGFVAFKSAE DASRALVAMN GKMIGSKPLY VALAQRKEER RARLQAQFSQ 120
  121 MRPMVMPPSV APRMPMYPPG VP

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 4.74
Match: 2f3jA
Description: No description for 2f3jA was found.

Predicted Domain #4
Region A:
Residues: [436-581] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVGQQLFYGQ PPPAFVNPQP GFGFQQHLIP GMRPSVGPIP NFVMPMVQQG QQPQRPAGRR  60
   61 AGTGGIQQPM PMGHQQMLPR GSRGGYRYAS GRGMPDNAFR GVGGLVPSPY EMGRMPLSDA 120
  121 GAPPQVPIGA LASALANSPP DQQRLM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.522879
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [582-660] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGESLYPLVD QLEHDQAAKV TGMLLEMDQT EVLHLIESPD ALKAKVAEAM EVLRNAQQQQ  60
   61 ANTPTDQLAA LTLSDGVVS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.0
Match: 2dydA
Description: No description for 2dydA was found.
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle