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View Structure Prediction Details

Protein: gi|50944495, gi|...
Organism: Oryza sativa Japonica Group
Length: 921 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|50944495, gi|....

Predicted Domain #1
Region A:
Residues: [1-92]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWSLAVASPH PAAAFAAARP RRGPRPAAAP SHRGVNPQRW RCEKTQAWSF WSSLWASDLP  60
   61 GGLYGDVSKN MLKPAAAVSV EQAEASAHLP KG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [93-559]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DMWSVHKFGG TCMGTSQRIQ NVADIILRDP SERKLVVVSA MSKVTDMMYN LVNKAQSRDD  60
   61 SYITALDEVF EKHMAAAKDL LGGEDLARFL SQLHADVSNL KAMLRAICIA GHATESFSDF 120
  121 VVGHGEIWSA QLLSFAIKKS GTPCSWMDTR EVLVVNPTGS NQVDPDYLES EKRLEKWFAR 180
  181 QPAETIIATG FIASTPENIP TTLKRDGSDF SAAIIGSLVK AGQVTIWTDV DGVFSADPRK 240
  241 VSEAVILSTL SYQEAWEMSY FGANVLHPRT IIPVMKYNIP IVIRNMFNIS APGTMICQQP 300
  301 ANESGDLEAC VKAFATIDKL SLVNVEGTGM AGVPGTASAI FGAVKDVGAN VIMISQASSE 360
  361 HSVCFAVPEK EVAAVSAALH VRFREALSAG RLSKVEVIHN CSILAAVGLK MASTPGVSAT 420
  421 LFDALAKANI NVRAIAQGCS EYNITVVLKQ EDCVRALRAA HSRFFLS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 116.0
Match: 3c1mA
Description: No description for 3c1mA was found.

Predicted Domain #3
Region A:
Residues: [560-921]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTTLAVGIIG PGLIGRTLLN QLKDQAAVLK ENMNIDLRVM GITGSRTMVL SDTGIDLAHW  60
   61 KEQLQTEAEP ANLDKFVDHL SENQLFPNRV LVDCTADTSV ASHYYDWLKK GIHVITPNKK 120
  121 ANSGPLDKYL KLRTLQRASY THYFYEATVG AGLPIISTLR GLLETGDKIL RIEGIFSGTL 180
  181 SYIFNNFEGT RAFSDVVSEA KEAGYTEPDP RDDLSGTDVA RKVIILARES GLKLELSDIP 240
  241 VRSLVPEALR SCSTADEYMQ KLPSFDQDWA RESKDAEAAG EVLRYVGVVD LVNKEGQVEL 300
  301 RRYKKDHPFA QLSGSDNIIA FTTSRYKEQP LIVRGPGAGA EVTAGGVFSD ILRLASYLGA 360
  361 PS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.39794
Match: 1ebfA
Description: Homoserine dehydrogenase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle