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View Structure Prediction Details

Protein: gi|42407806, gi|...
Organism: Oryza sativa Japonica Group
Length: 243 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42407806, gi|....

Description E-value Query
Range
Subject
Range
gi|19072766 - gi|19072766|gb|AAL84628.1|AF474138_1 typical P-type R2R3 Myb protein [Oryza sativa]
258.0 [0..1] [229..1]

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Predicted Domain #1
Region A:
Residues: [1-118]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRSPCCEKE HTNKGAWTKE EDERLVAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
   61 LRPDLKRGNF TADEDDLIIK LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIRRKLLG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.045757
Match: 1h88C
Description: c-Myb, DNA-binding domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.334577365229545 bayes_pls_golite062009
transcription regulator activity 0.0696342306231097 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [119-243]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGIDPVTHRP VNAAAATISF HPQPPPTTKE EQLILSKPPK CPDLNLDLCI SPPSCQEEDD  60
   61 DYEAKPAMIV RAPELQRRRG GLCFGCSLGL QKECKCSGGG AGAGAGNNFL GLRAGMLDFR 120
  121 SLPMK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle