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View Structure Prediction Details

Protein: gi|108708561, gi...
Organism: Oryza sativa Japonica Group
Length: 169 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|108708561, gi....

Description E-value Query
Range
Subject
Range
gi|73948472 - gi|73948472|ref|XP_855469.1| PREDICTED: similar to cytochrome c oxidase, subunit VIb polypeptide 1 [...
134.0 [0..88] [169..2]

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Predicted Domain #1
Region A:
Residues: [1-85]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAEAKAPSL AEEYSLPPQE APVEKAVEDK PQEAESISVT NDETPQADET ATAVEVNPET  60
   61 SEVQEVADKS EVEDTNPAAE ETNET

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [86-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEEEAEEKPE IKIETAPADF RFPTTNQTRH CFTRYVEYHR CVAAKGEDAP ECDKFAKYYR  60
   61 SLCPGEWVER WNEQRENGTF PGPL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.39794
Match: 1occH
Description: Cytochrome c oxidase subunit h
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
cytochrome-c oxidase activity 4.88393016135153 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors 4.88393016135153 bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor 4.88393016135153 bayes_pls_golite062009
heme-copper terminal oxidase activity 4.73002066663601 bayes_pls_golite062009
oxidoreductase activity 2.19064066530724 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle